PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021699
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 357aa    MW: 39034.4 Da    PI: 6.9047
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021699genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.5e-31215270156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQk+Rl+
  Lus10021699 215 KRRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKFRLH 270
                  689***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.704212272IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-27212273IPR009057Homeodomain-like
SuperFamilySSF466894.41E-18213273IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-26215270IPR006447Myb domain, plants
PfamPF002491.1E-6217267IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDSLHHKKRS NEYAGALEEE RRKIIMFQRE LPLSLELVTQ AIEACRRDLS GTTTEHEKSD  60
CSEQTSGECP VTEEFIPIIK ANSSSCDDED DNYEKKRPLK RTRSKSDWLR SVQLWNQPPD  120
PPSPKQAVPR KALVTEVKRN GAFQPFQKEK SNGDDNITVA PAAVVSAPPS KVLLPSAMSS  180
TADATPTAAG PSSVVSDSEN KQKEDEDKES QAKRKRRRCW SPELHRRFLH ALQQLGGSHV  240
ATPKQIRELM KVDGLTNDEV KSHLQKFRLH TRRPSHSVQN GSNSAGGPQF VVVGGIWVPP  300
VEYAAAVPDA PPPVATAEKQ PGSNSDDELQ PEGDGDHSCS PSTSSSVHTP TSSSAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212217KRKRRR
2213217RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021699
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021649606.11e-122transcription factor HHO3-like isoform X1
SwissprotQ9FPE85e-93HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A2C9VQR91e-116A0A2C9VQR9_MANES; Uncharacterized protein
STRINGLus100216990.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-90G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]