PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021554
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 566aa    MW: 61524.9 Da    PI: 6.5904
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021554genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.3e-31350409159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Lus10021554 350 MNDGCQWRKYGQKMAKGNPCPRAYYRCTMAsGCPVRKQVQRCAEDQSILITTYEGHHNHP 409
                  58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-34335411IPR003657WRKY domain
SuperFamilySSF1182901.83E-28343411IPR003657WRKY domain
PROSITE profilePS5081130.113345411IPR003657WRKY domain
SMARTSM007746.1E-38350410IPR003657WRKY domain
PfamPF031063.1E-27351409IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MSRTFSPTAN DHHPSSMPIP INEGNDDKTQ QLEVNDRDQL DNINSSRLDD VFSPENPRMV  60
ISEVNFLSND LLLPKEQDDV STLDALLMAQ DAINADLHPS CLVNLAVLQA EMDRLIAENQ  120
QLRSSLNQVN SDYNALQIQL FALMHQQQPP NQHLKSTTDN QMKSIEHKNG ASSTGAMVAR  180
QFIEMGKAPE NKGMNSSRLV GREEDPSQST SEEERSADCS MDCKSSSPKS TGNTMRLRRS  240
SREDGAVQDR YDLRSSSSAD HHHNNNSTSY RNNTSTTDHN NSNNSSGNNI IQKQVQYQQQ  300
PSGWTPNKVP KFEASSSSSA EAEERKAENT LSMIKKARVS VRARSEAAMM NDGCQWRKYG  360
QKMAKGNPCP RAYYRCTMAS GCPVRKQVQR CAEDQSILIT TYEGHHNHPL PPAAMTMAST  420
TSAAASMLLS GSMPSADGLP NTNLLARSLQ LSSPPSMATL SASAPFPTVT LDLTHPSTTL  480
QRHHASTQFL SSPNFPQQHL FGLHPEANAS SQSPADIVSA ATAAITADPN FTAALVAAVT  540
SIIGNGHGTN NGNSSPNVRT HIENT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22337413176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021554
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498KCD91e-114A0A498KCD9_MALDO; Uncharacterized protein
STRINGLus100215540.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-53WRKY family protein