PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021498
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 624aa    MW: 67852.1 Da    PI: 7.0685
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021498genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-093724091954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  Lus10021498 372 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 409
                  554459******************************88 PP
2BELL109.22.5e-35242310472
         BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e ++kk++L+s+l+eV++rYkqy++q+++v+ sFe+vaglg+a+pY++lAlka+S+hFr+Lk+ai++q+
  Lus10021498 242 ESRRKKSRLISMLDEVYRRYKQYYQQMEAVVTSFECVAGLGNAAPYANLALKAMSKHFRSLKNAITDQL 310
                  7899**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.4E-50177308IPR006563POX domain
PfamPF075264.2E-37182307IPR006563POX domain
PROSITE profilePS5007112.098350413IPR001356Homeobox domain
CDDcd000864.11E-13353414No hitNo description
SMARTSM003893.4E-10353417IPR001356Homeobox domain
SuperFamilySSF466895.56E-17355419IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27356417IPR009057Homeodomain-like
PfamPF059201.1E-18370409IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MADGYEPYHV PQQSRRDKLR DQLLHHHHHH HHLVAHNQNN NSAHLLPPPL PPHLYDPPSS  60
NFTGFISPNY MDSANSSNLP TLNPTDTSIH SQSPNPFLNF HPSRATGGAL LFKPEPLSLS  120
LSSSSHHQQQ HQQQHHDGLN FQSYVLPTTS INVDGGGGDA VASRCSVDDV LPLGPFTGYA  180
SVLKGSRFLN PAQQLLEEFC DVVGGGLLFP AAGEKISPDP SLLDPPLDDV DPLSCGSEFG  240
AESRRKKSRL ISMLDEVYRR YKQYYQQMEA VVTSFECVAG LGNAAPYANL ALKAMSKHFR  300
SLKNAITDQL SKASLGKSDD HALASGTVKL GSYGISRHNG QSSGLIEHHQ PVWRPQRGLP  360
ERAVTVLRAW LFEHFLHPYP TDTDKLMLAK QTGLSRSQVS NWFINARVRL WKPMVEEIHT  420
LETRQAQKAA HKDDHQRNKS TTTDHHQQPP YSNSDAAAGG SNPSTSSQPA AFDVPIPKRT  480
RNELPPADHM SVGSNEDHQQ HQHQHQQMYN NTSNNNMQSY GGGGFSGGHL GMEAGGGGVV  540
GGVSLTLGLH QHHHQGIGFL EPPPFSITSV AAQRFGLDTG GVSEGYNVME GGGGGGGSGF  600
DSSQNRHFGR DVMGGQLLHD FVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A5e-16359417563Homeobox protein Meis2
4xrm_B5e-16359417563Homeobox protein Meis2
4xrs_A4e-16359416158Homeobox protein Meis1
4xrs_B4e-16359416158Homeobox protein Meis1
5bng_A5e-16359417159Homeobox protein Meis2
5bng_B5e-16359417159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021498
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581269.11e-172BEL1-like homeodomain protein 9
TrEMBLB9SV361e-174B9SV36_RICCO; Bel1 homeotic protein, putative
STRINGLus100214980.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.19e-97TALE family protein