PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021490
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 288aa    MW: 32567.3 Da    PI: 8.3743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021490genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000281103123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C + F++   L  H+++H
  Lus10021490  81 YSCTFCRREFRSAQALGGHMNVH 103
                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.56E-678107No hitNo description
PROSITE profilePS5015711.15781108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEQPWMWSLG SDSNNNKQPR RQINNSSSSH LSNIQPLLPQ PSNNNNFLSS SYDDDSSWEE  60
QAFAEDAAGS HGGCVWPPRS YSCTFCRREF RSAQALGGHM NVHRRDRARL KQSPIADPHH  120
HPPIIQPYIG YQFTLDPSRL QIPTCSFVCS KNSPDDPPAS SSPDNPRVSS SSDQKTFLPS  180
AAEEERQHRK KRPATRGLEV DIETKEENYT RIIDSEEEAA VMRYKRRRRR SSSSELPILV  240
LKGLPAKLRE EVLEEMNKTS KTPGGCLREE LDLELRLGNR PTKVKSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-1276103229superman protein
2l1o_A1e-1276103229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224229KRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459321.19e-44zinc finger protein 10
TrEMBLB9HBV32e-42B9HBV3_POPTR; Uncharacterized protein
STRINGLus100214900.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.18e-26zinc-finger protein 10