PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021452
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 466aa    MW: 51976.1 Da    PI: 8.2086
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021452genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.88.7e-093133452254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  ++yp+  ++  LA+++gLt +qV++WF N R +
  Lus10021452 313 HPYPTDVDKHLLATQTGLTRNQVSNWFINARVR 345
                  89*****************************88 PP
2BELL86.82.5e-28190256672
         BELL   6 qkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  ++ ka+L  lleeV+krYk y++q+q+v+ssFe+vaglgs++pY+slA k +Sr+F+++k+ i +q+
  Lus10021452 190 HEMKARLSYLLEEVCKRYKVYNQQIQMVVSSFETVAGLGSSTPYVSLAFKSMSRKFKSMKQVILDQL 256
                  6779***********************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-27126254IPR006563POX domain
PfamPF075261.1E-29131252IPR006563POX domain
SMARTSM003895.4E-5289353IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-26292353IPR009057Homeodomain-like
SuperFamilySSF466894.15E-16295355IPR009057Homeodomain-like
PfamPF059204.9E-17306345IPR008422Homeobox KN domain
CDDcd000866.15E-10307350No hitNo description
PROSITE profilePS5007111.191308349IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MADDDSSLHY FPNPNRNPPP DIRRVTNLSE FVSSSNAFEF GHTRPTSFDG YDLTASKLHH  60
HHQPFNIEGY QDLIGFPTAH GGQEMLTNAR RRNEGLSLSL ASNNPRRELI RTTTSCSGNG  120
PLGPFTGYAT ILKNSRYLRP AQNLMEQWCG TTTVMSSATF HSSNEVLANF VADCNGGGCT  180
SSSRGVTNYH EMKARLSYLL EEVCKRYKVY NQQIQMVVSS FETVAGLGSS TPYVSLAFKS  240
MSRKFKSMKQ VILDQLRHVT KVLGDELVGR QIVGSSNLDF LHEAHQHVYR SQRGLPEGAV  300
AVLRGWLFDH FLHPYPTDVD KHLLATQTGL TRNQVSNWFI NARVRIWKPM VEEIHKLESH  360
NLVDQPGPSN STVEHNCHGF GPSTSSIGHE QAGQHQGKRS RVEFIQFPMN NGSTIGNSVS  420
LTLGLRHGFA ENVSQHQHQR LQEHEDRLMR EFGGGYGGMV HDFGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-15295353563Homeobox protein Meis2
4xrm_B2e-15295353563Homeobox protein Meis2
5bng_A2e-15295353159Homeobox protein Meis2
5bng_B2e-15295353159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021452
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488058.12e-99BEL1-like homeodomain protein 9
RefseqXP_018857335.12e-99PREDICTED: BEL1-like homeodomain protein 9 isoform X3
RefseqXP_024957472.12e-99BEL1-like homeodomain protein 9
TrEMBLA0A067LIF51e-100A0A067LIF5_JATCU; Uncharacterized protein
TrEMBLA0A2I4HMG74e-98A0A2I4HMG7_JUGRE; BEL1-like homeodomain protein 9 isoform X3
STRINGLus100214520.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.18e-85BEL1-like homeodomain 8