PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021326
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 307aa    MW: 34646.4 Da    PI: 8.85
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021326genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.83.3e-3178179198
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+k ltpsdv+k++rlv+pk++ae++     + +  ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F+++++++ +l+
  Lus10021326  78 FEKPLTPSDVGKLNRLVIPKQHAERYfplgaD-SVDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKQLESGDIVLFQRHRSDGDRLF 174
                  99***************************963.3457789************************************************8887888899 PP

                  EEEE- CS
           B3  94 vkvfr 98 
                  +++ r
  Lus10021326 175 IGWKR 179
                  98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-4269184IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-3073182IPR015300DNA-binding pseudobarrel domain
CDDcd100174.13E-2777170No hitNo description
PfamPF023624.5E-2878179IPR003340B3 DNA binding domain
SMARTSM010199.7E-2478181IPR003340B3 DNA binding domain
PROSITE profilePS5086313.98778181IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSINQFYPTD QHHHHHQQQQ LLWWQQHHHQ MDHHPSPPLP PWISAASPST ALNFNLNHEH  60
SSTAEFDDLS PSSKQAMFEK PLTPSDVGKL NRLVIPKQHA ERYFPLGADS VDKGLLLSFE  120
DESGKCWRFR YSYWNSSQSY VLTKGWSRYV KEKQLESGDI VLFQRHRSDG DRLFIGWKRG  180
AQNNNNGSKN ISPDRQRHYN QGGGGGAGRG VVYTSSPVKP YLEHGGVSGR TMTMMGNINN  240
VPYQSDDPRH AATGGGGEQQ KISGGGNSKR LRLFGVNMEW QPENEEPPPE SSSLFPYTTL  300
FRSIII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-48721792112B3 domain-containing transcription factor NGA1
5os9_B2e-48721792112B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021326
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530522.23e-77B3 domain-containing protein At2g36080
RefseqXP_024458719.13e-77B3 domain-containing protein At2g36080 isoform X2
TrEMBLB9SX036e-76B9SX03_RICCO; Transcription factor, putative
TrEMBLU5GBS26e-76U5GBS2_POPTR; Uncharacterized protein
STRINGLus100213260.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.22e-60B3 family protein