PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021270
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-other
Protein Properties Length: 660aa    MW: 72151.3 Da    PI: 6.3112
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021270genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-093704071954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Lus10021270 370 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 407
                  554458******************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.2E-4141246IPR006563POX domain
PfamPF075261.5E-16144229IPR006563POX domain
SMARTSM003892.0E-6351415IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.3E-27357417IPR009057Homeodomain-like
SuperFamilySSF466895.56E-16362417IPR009057Homeodomain-like
CDDcd000862.17E-11362412No hitNo description
PfamPF059202.7E-18368407IPR008422Homeobox KN domain
PROSITE profilePS5007111.612370411IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MTTYFHGGNP AEIQTEGLHT LLLMNPTYVH HYSDHDVSPP PPPHHFSSSH LTEHSVSDAK  60
QQQFVGIPLD PHHYNSLYSP VDLSSSETRA SPRASHHHHH HQQALSLTLS SHQQHRQQHQ  120
QVSSSSGGVT ENCAAGVVPT APGVLLSSKY LKAAQELIDE VVNVNVNGGA INGKTEASKK  180
GNTNNAVSKE AESAASGDGK ISPELTTAER QEVQMRKGKL INMLDEVYEN WIFILWSRCV  240
LTGGAEVQAV QSPDAGGDIG VRASGGDGIG EDLHGASFAD DLEAVPIVER RDRRPNQGGE  300
QELRGRGNSA ENGRFEAKIR GSSSPAAAGS SADWNDAAQR LETSERLDSA GIPKRGLLER  360
PVSVLRAWLF EHFLHPYPKD SDKHMLAKQT GLTRSQVSNW FINARVRLWK PMVEEMYIEE  420
MKDKDSSELD HNRSKFDQQN EDSSSKSVPF HDHNTNSSIE NQAINCSPNQ NQNVPSGFTI  480
SPQAFSLTAS SELEGITQGS PKKPRNRHIN LPSVPSMDQS SNNNHNSIEF VDERQSRDIG  540
YSFMGGQTNF MGGAFGQYPI AEIGARFDAD QFAQRFSGNG VSLSLGLPHC ENLNLSANHH  600
TFLPNHNIQP GRRLEMGDAN EFGAINGSDP HSSTTTYESI NIQNRKGFVA AQLLPDFVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-15363414758Homeobox protein Meis1
4xrs_B3e-15363414758Homeobox protein Meis1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8299081e-103EU829908.1 Linum usitatissimum clone LU0024H01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016680593.11e-154PREDICTED: BEL1-like homeodomain protein 1
STRINGLus100212700.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.38e-66BEL1-like homeodomain 1