PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021043
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 308aa    MW: 32627 Da    PI: 9.8289
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021043genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.2e-07107130427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  + C+ +     Ck+Gd+C+FaHg+
  Lus10021043 107 RMCNKYNSAEGCKFGDKCHFAHGE 130
                  66888888888***********96 PP
2zf-CCCH31.72.5e-10276300126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt++C++f + GtC +G rC+FaHg
  Lus10021043 276 YKTKICDNFTK-GTCTFGQRCHFAHG 300
                  9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.4833563IPR000571Zinc finger, CCCH-type
SMARTSM003563.33562IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-53662IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-63760IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-8100135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-14100136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.427103131IPR000571Zinc finger, CCCH-type
SMARTSM003560.43105130IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.92E-15171255IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.7E-15178248IPR004088K Homology domain, type 1
SMARTSM003226.4E-12178248IPR004087K Homology domain
PROSITE profilePS5008413.774179243IPR004088K Homology domain, type 1
CDDcd001051.87E-13181244No hitNo description
PfamPF000134.3E-10181245IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.0E-15271305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-8274305IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-7275301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.948275302IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-8276300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDARKRARPD GAVNNYNGGF KKSRPEMDPL STAVGSKSKP CTKFFSTAGC PFGDGCHFQH  60
CVPGGYNAVS QIMNRSSSAT PTPKHMPPPP QSVSNGAAAN PPAIKNRMCN KYNSAEGCKF  120
GDKCHFAHGE WELRRPFAPS HDNHLPITGG PGPLPGRIMK RMDQPPTPAA PPLAGFGDTA  180
TAKISVDASL AGPIIGKGGV NSKQICRLTG AKLSIRDHET DPNLRNIELE GTFDQIAQAS  240
AMVKEVIANI VPVGVGRQAV KPSGFSGEKH HPGSNYKTKI CDNFTKGTCT FGQRCHFAHG  300
AAELRTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021043
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1744450.0JX174445.1 Linum usitatissimum clone LuBAC364K11, complete sequence.
GenBankKX0345580.0KX034558.1 Linum usitatissimum clone 28C5_FAD2B_M5791_Scaffold155 genomic sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021643121.11e-141zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-101C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A165G0Z20.0A0A165G0Z2_LINUS; Kh domain containing RNA binding protein-nucleic acid binding, RNA binding, zinc ion binding
STRINGLus100210430.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.19e-61C3H family protein