PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10021035 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | G2-like | ||||||||
Protein Properties | Length: 647aa MW: 70721.9 Da PI: 9.0703 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.8 | 8.7e-32 | 166 | 220 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Lus10021035 166 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 220 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.118 | 163 | 223 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 164 | 221 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.14E-17 | 165 | 220 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-23 | 166 | 221 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.8E-8 | 170 | 219 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF54928 | 3.22E-19 | 377 | 460 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene3D | G3DSA:3.30.70.330 | 3.1E-20 | 379 | 458 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
CDD | cd12384 | 1.47E-30 | 383 | 458 | No hit | No description |
PROSITE profile | PS50102 | 14.351 | 383 | 451 | IPR000504 | RNA recognition motif domain |
SMART | SM00360 | 8.9E-18 | 384 | 456 | IPR000504 | RNA recognition motif domain |
Pfam | PF00076 | 7.2E-13 | 385 | 443 | IPR000504 | RNA recognition motif domain |
Gene3D | G3DSA:3.30.70.330 | 1.2E-20 | 465 | 553 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
SuperFamily | SSF54928 | 1.09E-21 | 470 | 558 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS50102 | 16.551 | 474 | 551 | IPR000504 | RNA recognition motif domain |
SMART | SM00360 | 2.3E-20 | 475 | 547 | IPR000504 | RNA recognition motif domain |
Pfam | PF00076 | 6.7E-15 | 476 | 538 | IPR000504 | RNA recognition motif domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MVGKMNAPNV DFHDGLLINS NNNQLFMGQQ QEIWGNMGTA ARLESAKPPS SCIVSRFESP 60 ASAFYATERY MGLQQYDHHF SGSHQDSSQL QQLMKQSSNY SVYRRRNQLE QLDFKPFQSN 120 LQDEKMQVGV PISQMGFQSR HDQNDLSPGG GGGGGSMGSG AGLSNKTRIR WTQDLHEKFV 180 ECVNRLGGAD KATPKAILKL MDSEGLTIFH VKSHLQKYRI AKYMPDTSEG KADRRSVIND 240 VSQLDPKAIW LTMVLQWISN PGGASATTRR PEASPRTAGG NNIIRFPDLS CFTEQAFRTA 300 FSITEEPKYS SPDRASSSME EMKKRKMDEA INGGEAANQE LLRSLLDPLS KTQLIDLLSR 360 LGTQYPSIAE EIKSIAIADP VHRKLFVRGL AWTTTSDSLC AAFRMHGEIE EGAVIHDKAT 420 GKSRGYGFIT FNHMESAQSA LKAPSNLIDG RLAVCNLACE GLSGASNTPD LAQRKLYIGG 480 LSPEITSEAL LKYFGRQGEI EEGSVAYDKD TNESRGFGFV TYKTLEAAKK ALDDPQKILG 540 RRSLIVKLAD SNKGKAAHLQ AAAPAPVLPM VQGPFPTGYA QPGRPHAGFP PAGYAYPQAL 600 GSYSPPPYQM QPQVLYLQGS ARKHQSGIST PAPVGMSGYP YFHPKQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-22 | 166 | 223 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-22 | 166 | 223 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-22 | 166 | 223 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-22 | 166 | 223 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10021035 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX174445 | 1e-141 | JX174445.1 Linum usitatissimum clone LuBAC364K11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007028959.2 | 1e-161 | PREDICTED: UBP1-associated protein 2C isoform X2 | ||||
TrEMBL | A0A2C9V7I3 | 1e-158 | A0A2C9V7I3_MANES; Uncharacterized protein | ||||
STRING | Lus10021035 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10834 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.2 | 9e-42 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10021035 |