PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10021007

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Protein Properties

Length: 311aa MW: 34083.8 Da PI: 8.6172

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10021007	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35	2.6e-11	17	104	9	98
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l++grl+++ +f+ ++g+ s + +l+ ++g++W++ l +y ++ +r++l++G ++F + + +g ++F++ g+s+f v++f+ Lus10021007 17 GDLEEGRLRISEDFVMKCGHL--LSGEAVLKVPDGKVWKIGLakQYFRREERIWLSAGSRRFIEYYSIGVGSLLIFEFRGSSRF--QVSIFD 104 567899**********866..7789***********6555899999***********************9888888..999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.5E-16	8	108	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.07E-12	8	104	No hit	No description
SuperFamily	SSF101936	1.22E-16	8	108	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.897	9	106	IPR003340	B3 DNA binding domain
SMART	SM01019	8.2E-11	10	106	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.8E-8	17	104	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MAVNNLSKIF WQIIYPGDLE EGRLRISEDF VMKCGHLLSG EAVLKVPDGK VWKIGLAKQY 60 FRREERIWLS AGSRRFIEYY SIGVGSLLIF EFRGSSRFQV SIFDLTACEI VYPVSSGNPD 120 SSSDSDFDFD DPHRSRGIGA AAAMSNASGS RQQPQQGRTP HHFANLNISD SESNSDSSSD 180 SDSDDTDFRG KSKGKQPVAA VQENGGNASS SRPQQNPNAA GVSFTEDLWS KLKKSTIVNT 240 QGFQSKFMTL SPATQRAIRR AIDSDPKNPS FLVLIGRSHL QSGNMDRRRA PDGKSAEDNS 300 VCGRRREGCG *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10021007

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10021007	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-20	B3 family protein

Link Out ? help Back to Top
Phytozome	Lus10021007