PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10021006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 129aa MW: 14650.8 Da PI: 9.1493 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.6 | 9.8e-18 | 8 | 99 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 k+ +p + + l+lp fae++ +g++ ++l+ ++g++W v++ yr+++ l++GW eF +n++ egD++vF+l+++++ l+++vfr Lus10021006 8 HKIILPRTLHDR-KLYLPSCFAEKNlNGVSG---FIKLQYTDGKQWPVRCLYRGGR--AKLSQGWFEFTLENNIGEGDVCVFELMKSRDVVLKLTVFR 99 555555555555.5***********877743...5***************665555..66*************************9888888988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-23 | 3 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-23 | 4 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.04E-19 | 5 | 99 | No hit | No description |
PROSITE profile | PS50863 | 13.578 | 6 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-18 | 7 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.9E-16 | 14 | 99 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MPARPYFHKI ILPRTLHDRK LYLPSCFAEK NLNGVSGFIK LQYTDGKQWP VRCLYRGGRA 60 KLSQGWFEFT LENNIGEGDV CVFELMKSRD VVLKLTVFRV MDENGGGGGG YVNHHQHYDA 120 VLQPPTQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-41 | 2 | 102 | 44 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-41 | 2 | 102 | 44 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization (By similarity). Binds to DNA in vitro in a non-sequence-specific manner. XLG2 promotes the DNA binding activity of RTV1 specifically to promoter regions of FT and SOC1 in vivo and thus leads to the activation of floral integrator genes. {ECO:0000250, ECO:0000269|PubMed:22232549}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10021006 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold. {ECO:0000269|PubMed:22232549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021643267.1 | 8e-50 | B3 domain-containing transcription factor VRN1-like isoform X5 | ||||
Refseq | XP_021643268.1 | 8e-50 | B3 domain-containing transcription factor VRN1-like isoform X5 | ||||
Refseq | XP_021643269.1 | 2e-50 | B3 domain-containing protein REM19-like isoform X6 | ||||
Swissprot | Q9XIB5 | 3e-41 | REM19_ARATH; B3 domain-containing protein REM19 | ||||
TrEMBL | A0A2C9U6Q9 | 4e-47 | A0A2C9U6Q9_MANES; Uncharacterized protein | ||||
TrEMBL | A0A392NNH3 | 3e-47 | A0A392NNH3_9FABA; B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | I3SUI2 | 1e-47 | I3SUI2_LOTJA; Uncharacterized protein | ||||
STRING | Lus10021006 | 9e-93 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 5e-44 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10021006 |
Publications ? help Back to Top | |||
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