PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10020923

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 314aa MW: 34037.4 Da PI: 8.3119

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10020923	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	137	156	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ Lus10020923 137 FSCQVCFKTFNRYNNLQMHM 156 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.4E-5	125	159	No hit	No description
PROSITE profile	PS50157	10.201	137	164	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.4E-4	137	156	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	139	159	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.5E-5	203	241	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MEPSSELCVI SSCMYSCSLA GGSASSSSSS SSSSSSSCTN PAIKALDLFP GATDSSTTSP 60 PESYLAPLDL VSKLQKPHDE DVTVALQIGL PDHHHYPDNR DKYCSSMDNV PIATNNVASS 120 QYWIPTHEQI LIGFTHFSCQ VCFKTFNRYN NLQMHMWGHG SQYRKGPESL KGTQPRFMME 180 VPCYCCAAGC KNNIEHPRAK PLKDFRTLQT HYKRKHGVKP FMCRKCGKLL AVKGDWRTHE 240 KNCGKSWLCM CGSDFKHKRS LKDHVKAFGS GHGSLVSSSN SPSSTCSSSL DAGGGGGDMM 300 VHDNVGSSST SVV*

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10020923

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017645159.1	1e-118	PREDICTED: protein TRANSPARENT TESTA 1-like
Refseq	XP_022772297.1	1e-118	protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	1e-105	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A1Q3B6Q8	1e-117	A0A1Q3B6Q8_CEPFO; Zf-C2H2_4 domain-containing protein
STRING	Lus10020923	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-102	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Lus10020923

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]