PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020899
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YB
Protein Properties Length: 247aa    MW: 28171.9 Da    PI: 6.51
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020899genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.27.3e-5661156297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  +eqdrflPianv+rimkkv+P+n+kisk+aketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv plk+yl+kyre+egek
  Lus10020899  61 KEQDRFLPIANVGRIMKKVIPGNGKISKEAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVGPLKLYLQKYREIEGEK 156
                  89*******************************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.5E-5257187IPR009072Histone-fold
SuperFamilySSF471135.74E-4063177IPR009072Histone-fold
PfamPF008088.8E-2866130IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.7E-1994112No hitNo description
PROSITE patternPS00685097113IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.7E-19113131No hitNo description
PRINTSPR006152.7E-19132150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEDDHQSHEN DTKPTITTTT KRTRDQTLEG GSKSVVNSDN NNDTNETISD RNNSNYQTSN  60
KEQDRFLPIA NVGRIMKKVI PGNGKISKEA KETVQECVSE FISFVTGEAS DKCQREKRKT  120
INGDDIIWAI TTLGFEDYVG PLKLYLQKYR EIEGEKLNLP KQQRVVEQRL PPQQYHHHHN  180
HQDGGDHQSI HHQSFDNVYS SINNLMSSSN FVPTDHQGFS LSFSSPTSSI LKHLQQHDEL  240
DSVRHW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4561151292Transcription factor HapC (Eurofung)
4g92_B2e-4561151292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020899
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630565.15e-88nuclear transcription factor Y subunit B-7
SwissprotQ9SIT91e-68NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A2C9UX021e-86A0A2C9UX02_MANES; Uncharacterized protein
STRINGLus100208990.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132492430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.15e-66nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]