PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020832
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 266aa    MW: 28571.6 Da    PI: 9.7217
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020832genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.2e-32186244159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vk++ +prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Lus10020832 186 LDDGYKWRKYGQKVVKNTLHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHS 244
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-32170244IPR003657WRKY domain
PROSITE profilePS5081128.977181246IPR003657WRKY domain
SuperFamilySSF1182903.4E-28182245IPR003657WRKY domain
SMARTSM007742.2E-37186245IPR003657WRKY domain
PfamPF031062.4E-25187243IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MMGSTTGGGM SLLSSFPPHQ TLPPTSSTTT AAAMVATSSP SADAVHTAAA VNNISTHHHH  60
ADLISLQRST APLPNLWGWP GELGGNNKSR PPENISYNTY GGDGDHDQFR HRLVDNSDGT  120
GDGGGGGGSS SKVMSSSSNV TTTAAMKLKK KIGIRNGGVG GGGGCRKKVR EPRFSFKTLS  180
EEVDVLDDGY KWRKYGQKVV KNTLHPRSYY RCTQDNCRVK KRVERLAEDP RMVITTYEGR  240
HAHSPSQDQD DSNSHSPTHL SNFFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-251802431174Probable WRKY transcription factor 4
2lex_A3e-251802431174Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020832
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315824.11e-59probable WRKY transcription factor 13
SwissprotQ9SVB74e-50WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLD9ZJG02e-58D9ZJG0_MALDO; WRKY domain class transcription factor
STRINGLus100208320.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.17e-48WRKY DNA-binding protein 13