PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020794
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 912aa    MW: 101557 Da    PI: 9.5637
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020794genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.58.9e-5661331128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lppGfrFhPtdeelv +yLk k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s +
  Lus10020794   6 LPPGFRFHPTDEELVAYYLKSKINGQKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDMEWYFFSPRDRKYPNGSRTNRATKTGYWKATGKDRKVNS-Q 101
                  79****************************.99***************6435566888**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++ vg+kktLv+y+grap+g ++dWvmheyrl
  Lus10020794 102 TRSVGMKKTLVYYRGRAPHGARSDWVMHEYRL 133
                  999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-634157IPR003441NAC domain
PROSITE profilePS5100561.2776157IPR003441NAC domain
PfamPF023652.5E-297133IPR003441NAC domain
HamapMF_0051213.299372779IPR020924Ribosomal protein S6e, archaeal
SMARTSM014053.9E-79663790IPR001377Ribosomal protein S6e
PfamPF010929.0E-56663790IPR001377Ribosomal protein S6e
PROSITE patternPS005780714725IPR018282Ribosomal protein S6e, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKSKING QKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DMEWYFFSPR DRKYPNGSRT NRATKTGYWK ATGKDRKVNS QTRSVGMKKT LVYYRGRAPH  120
GARSDWVMHE YRLDDRECDS PASGLQDAYA LCRVFKKTAA PTPPKVHVEG YSSPMNNHMH  180
NHHPSQLQVA SQHNNERSSS STVYSDGGSP SYAANFGNGA YVDTCSQANA GFNRVNDSVV  240
DNRGTTWTIG ATSSSSMHPF SFQPTPFPSP CYGSSSIPNY PPSKVDIALE CARLQHRFTL  300
PPLEVEDYPN KRMMSTMMMN DSSSSHHHNN NQGSDLLQEI LSVAHASQEL INNNNNDQYN  360
SFQAAGFGSG ANDFSAVADN NDFTFTSSSA AGNNMSISSN DMSSSWLDNS RSVDIGDDVV  420
DGQFMRSDRM VENLRWLGMS NDELQQSFMN EHKIVPIASI SSFTSMNTHS DQVEAGADNQ  480
LDHNDGLGFI NDSDDVYNSL EFIVDDEPSA NAQDDVVASS PSFEVVHEEV RVNQGLFIST  540
RQAADTFFHQ LVPSQTVKVQ LNQSASAVHP HQFFTVKKKQ RPTSTMVNSY GTGVINLVSL  600
IIVALLMHCL SLKEDKFDGS SAVKSPVISI HRGGGDRKGS KSVGVVLKKF GILLTISFAL  660
WTMLFNIANP TTGCQKKLEI DDDQKLRAFF DKRISQEVSG DALGEEFKGY VFKIMGGCDK  720
QGFPMKQGVL NPGRVRLLLT RGTPCFRGYG RRNGERRRKS VRGCIVSQDL SVLNLVIVKK  780
GDNDLPGLTD TEKPRMRGPK RASKIRKLFN LSKEDDVRKY VNTYRRTFTA KNGKEVSKAP  840
KIQRLVTPVT LQRKRARLAE KKRRVEKANS EAAEYQKLLA SRLKEQRERR SESLAKKRSR  900
LSTASKPSVV A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_BG1e-145663905124340S ribosomal protein S6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020794
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8307300.0EU830730.1 Linum usitatissimum clone LU0029E03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579297.10.0NAC domain-containing protein 86
RefseqXP_025014445.10.0NAC domain-containing protein 86
TrEMBLB9SKR00.0B9SKR0_RICCO; Uncharacterized protein
STRINGLus100207940.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-134NAC domain containing protein 28