PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020766
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LSD
Protein Properties Length: 170aa    MW: 18172.7 Da    PI: 4.6535
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020766genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.78.1e-1379102124
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                  Cg+C+ lLsYP GA++V+C++C t
  Lus10020766  79 CGSCQRLLSYPKGAKHVKCSCCET 102
                  **********************87 PP
2zf-LSD145.31.4e-14117141125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+C tlL+YP+G++sVRC++C++V
  Lus10020766 117 CGSCPTLLMYPYGSTSVRCSSCQAV 141
                  ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.1E-1576106IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-1079102IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.7E-15114143IPR005735Zinc finger, LSD1-type
PfamPF069439.9E-12117141IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MENESESMED IEPPPPGWEP IPPSQPSLQP ATLPPPQSIP PSQPSEQPAT LPPPPSSPPA  60
LPQLQPQSVA EEQMAQMVCG SCQRLLSYPK GAKHVKCSCC ETLNFVLQAH ELGLVNCGSC  120
PTLLMYPYGS TSVRCSSCQA VTEIGEHNQR PPWSVIQGHP PISNPNVVH*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020766
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091597.13e-49protein LOL2
SwissprotO654265e-40LOL2_ARATH; Protein LOL2
TrEMBLA0A2I4ELA61e-45A0A2I4ELA6_JUGRE; protein LOL2 isoform X1
STRINGLus100207661e-115(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.11e-38lsd one like 2