PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10020621

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NF-YB

Protein Properties

Length: 159aa MW: 17634.7 Da PI: 4.7966

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10020621	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	43.3	9e-14	10	101	7	93
NF-YB 7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 +lP a v r++k++l + + i k + e + fi ++++ a+d c++ kr+tin++d+l al ++ f ++v+pl+ l+++++ Lus10020621 10 ELPKAMVRRVVKEALSQvspdaDFNIHKGSLLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKALEEIEFPEFVAPLRSSLAEFKKK 101 799*******9996411111446777777778888999********************************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.8E-32	9	143	IPR009072	Histone-fold
Pfam	PF00808	5.6E-10	10	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.82E-24	11	131	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MEKVVPEVEE LPKAMVRRVV KEALSQVSPD ADFNIHKGSL LAFCESARIF IHYLSATAND 60 ICKESKRQTI NAEDVLKALE EIEFPEFVAP LRSSLAEFKK KNAGKRAAAS LQARETKKKK 120 KAEEETPSKK DGNKTKQPEQ DEDVDDANDA SEDDGNDE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	120	KKKNAGKRAAASLQARETKKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10020621

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447729.1	7e-64	PREDICTED: DNA polymerase epsilon subunit 3
TrEMBL	A0A1Q3CYN3	9e-64	A0A1Q3CYN3_CEPFO; CBFD_NFYB_HMF domain-containing protein
STRING	Lus10020621	1e-110	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11863	32	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	1e-37	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	Lus10020621