PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020597
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 393aa    MW: 45208.7 Da    PI: 6.6424
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020597genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05229248120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  + C++C+k+F+r  n++ H+
  Lus10020597 229 FACSICSKTFNRYNNMQMHM 248
                  78*****************9 PP
2zf-C2H216.42.5e-05313335123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +Cgk+F  k + ++H +++
  Lus10020597 313 FSCRKCGKTFAVKGDWRTHEKNC 335
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.64E-5224252No hitNo description
SMARTSM003550.17229251IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45229256IPR007087Zinc finger, C2H2
PfamPF139122.9E-4229248IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-5229248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
PROSITE profilePS508688.348271287IPR003616Post-SET domain
SMARTSM00355140275308IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.33E-5295333No hitNo description
Gene3DG3DSA:3.30.160.604.8E-4300333IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035532313333IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808313333IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGLRDLYHLT QTPNSTHPPT FIEWLKPSSL ISDHNHYPPF LGQQVHDHHH IMAIYPQKEE  60
EEEEKEEEKE EEEEEEEEEE EEEASIKCLP LLSKLMSTQE HHNHKDCNFK IKDDPIKERL  120
DQKSEAEVED MEVTSSIHVV SATNNYSTSS NNTSSTSVEV KQEVKMLDDE EVIVGLHIGL  180
PNKNNKMLQL KEPKMVNYGG NLERKSSINR ENRFWIPTPA HILVGPMQFA CSICSKTFNR  240
YNNMQMHMWG HGSEFRKGPD SLKGTQPTAM MRLPCYCSAQ GCKNNINHPR AKPLKDFRTL  300
QTHYKRKHGS KVFSCRKCGK TFAVKGDWRT HEKNCGKLWY CTCGSDFKHK RSLKDHIRSF  360
GKSHSPHPSL EGFEDEKECV TSTGSDDDFT CS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020597
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487965.11e-133zinc finger protein WIP3
SwissprotQ9SGD11e-112ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A061GZR01e-129A0A061GZR0_THECC; WIP domain protein 3
TrEMBLA0A067F4B81e-130A0A067F4B8_CITSI; Uncharacterized protein (Fragment)
STRINGLus100205970.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-110WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]