PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020315
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 414aa    MW: 45332.8 Da    PI: 7.0938
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020315genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.61.5e-3973132261
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                  ++k ++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ 
  Lus10020315  73 PDKVIPCPRCNSMETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 132
                  78999*****************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2970130IPR003851Zinc finger, Dof-type
PfamPF027015.9E-3275131IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.52877131IPR003851Zinc finger, Dof-type
PROSITE patternPS01361079115IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MGTDGGMRSS SPFCRDPAIK LFGRKIALPE SLIQPIPPSE SNGCSNNDEK ANKEGNSSME  60
QEQQSSSEVM KKPDKVIPCP RCNSMETKFC YFNNYNVNQP RHFCKNCQRY WTAGGTMRNV  120
PIGAGRRKNK HLASHYRQIL LEKNPKDSPP PAQPVVSSPS VVLKFGHEEV SLQQQPLCQS  180
MQNLLNIGSE KSSLVERNGG EEASTSENVT SRIDRDPEGD IDRSSSEDWN TTQLNPPLQC  240
YPVTPLIVPW NWNGVAQYPN QVQLCPTSAP MLAIPPGYSP PLQFLPAASY LMWTTTTPQS  300
CQSPTSSTSS LGKHSRDSND EDQKADEEKT VVVVPKTLRI DESSLWSTAA AALSPKQEQQ  360
PSSVLVSKGS IFRTFDAKLD NAKVAHVVPD SSAHILEANP AALSRSLSFK EGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020315
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624402.11e-89cyclic dof factor 1-like
TrEMBLA0A2C9VAS03e-88A0A2C9VAS0_MANES; Uncharacterized protein
STRINGLus100203150.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.24e-54cycling DOF factor 2