PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020314
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 356aa    MW: 39219 Da    PI: 7.4473
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020314genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.91.2e-391574261
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                 ++k ++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ 
  Lus10020314 15 PDKVIPCPRCNSMETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 74
                 78999*****************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-30372IPR003851Zinc finger, Dof-type
PfamPF027014.7E-321773IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5281973IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102157IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEQEQQSSSE VMKKPDKVIP CPRCNSMETK FCYFNNYNVN QPRHFCKNCQ RYWTAGGTMR  60
NVPIGAGRRK NKHLASHYRQ ILLEKNPKDS PPPAQPVVSS PSVVLKFGHE EVSLQQPPLC  120
QSMQNLLNIG SEKSSLVERN GGEEASTSEN VTSRIDRDPE GDIDRSSSED WNTTQLNPPL  180
QCYPVTPLIV PWNWNGVAQY PNQVQLCPTS APMLAIPPGY SPPLQFLPAA SYLMWTTTTP  240
QSCQSPTSST SSLGKHSRDS NDEDQKADEE KTVVVVPKTL RIDESSLWST AAAALSPKQE  300
QQPSSVLVSK GSIFRTFDAK SDNAKVAHIV PHSSAHILEA NPAALSRSLS FKEGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020314
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047035.16e-85PREDICTED: cyclic dof factor 3-like
RefseqXP_011047036.16e-85PREDICTED: cyclic dof factor 3-like
TrEMBLA0A2C9VAS02e-80A0A2C9VAS0_MANES; Uncharacterized protein
STRINGLus100203140.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.29e-55cycling DOF factor 2