PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020215
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 552aa    MW: 59872.8 Da    PI: 8.0973
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020215genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.1e-3285142260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +Dgy+WrKYGqK+vkgse+prsYY+Cts +C+vkkk+ers+ d++++ei+Y+g Hnh+k
  Lus10020215  85 EDGYSWRKYGQKQVKGSEYPRSYYKCTSLSCQVKKKIERSH-DGQITEIIYKGAHNHPK 142
                  7****************************************.***************85 PP
2WRKY102.52.4e-32287345159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver++++ k+v++tYeg+Hnh+
  Lus10020215 287 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCTVRKHVERASHNLKYVITTYEGKHNHQ 345
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-2782142IPR003657WRKY domain
SuperFamilySSF1182903.01E-2483142IPR003657WRKY domain
SMARTSM007743.6E-3584142IPR003657WRKY domain
PfamPF031061.7E-2485141IPR003657WRKY domain
PROSITE profilePS5081123.0285143IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-35272347IPR003657WRKY domain
SuperFamilySSF1182903.14E-28280347IPR003657WRKY domain
PROSITE profilePS5081137.195282347IPR003657WRKY domain
SMARTSM007744.9E-37287346IPR003657WRKY domain
PfamPF031061.6E-24288345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MDFEFPAEFS KEAAATICSR DLVIDMKPIN SMAQPNFIDA QVCGSDVPRN QTSTKRGPIK  60
GKIDGMHMED QKGTFMGTGG GRTSEDGYSW RKYGQKQVKG SEYPRSYYKC TSLSCQVKKK  120
IERSHDGQIT EIIYKGAHNH PKTQSVRRAQ PDWCHDVPEI DDGNESCVKT EAGSGQKNNE  180
PGSDWRAEGM ERTSSPSVVT ELSDLLSTGQ GKPVVTVESV GTPELSSAVV SHEDDDDGII  240
IGGYTDEEES DSKRRKTESC MVEANMTSRA VRQPRVVVQI ESEIDILDDG YRWRKYGQKV  300
VKGNPNPRSY YKCTSPGCTV RKHVERASHN LKYVITTYEG KHNHQVPVAK NGNTLSSNSC  360
GLSSALSNLQ PGSALARGLS SLKQESQVQR SSSSVFNNSE YMRSSSFSGN LVSEMKVGGP  420
SLYPMNFPSV QSSMAYGSYG FNSNRTTPVH LPGSMASLIP QFPRSSLSSN LHTLGGIEML  480
NNGGGMGMGM GIMGQVHQPY FPAAAGGGGG GGGGQQLMMM PKQERRDDNV YNSSSTSSSV  540
LNQRIMGKFA S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-3485348878Probable WRKY transcription factor 4
2lex_A5e-3485348878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020215
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020539016.10.0probable WRKY transcription factor 34 isoform X1
TrEMBLM9TNR10.0M9TNR1_JATCU; WRKY transcription factor 10
STRINGLus100202150.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.14e-82WRKY DNA-binding protein 2