PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10020215 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 552aa MW: 59872.8 Da PI: 8.0973 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.1 | 3.1e-32 | 85 | 142 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +Dgy+WrKYGqK+vkgse+prsYY+Cts +C+vkkk+ers+ d++++ei+Y+g Hnh+k Lus10020215 85 EDGYSWRKYGQKQVKGSEYPRSYYKCTSLSCQVKKKIERSH-DGQITEIIYKGAHNHPK 142 7****************************************.***************85 PP | |||||||
2 | WRKY | 102.5 | 2.4e-32 | 287 | 345 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver++++ k+v++tYeg+Hnh+ Lus10020215 287 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCTVRKHVERASHNLKYVITTYEGKHNHQ 345 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-27 | 82 | 142 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-24 | 83 | 142 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-35 | 84 | 142 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-24 | 85 | 141 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.02 | 85 | 143 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-35 | 272 | 347 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-28 | 280 | 347 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.195 | 282 | 347 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.9E-37 | 287 | 346 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-24 | 288 | 345 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MDFEFPAEFS KEAAATICSR DLVIDMKPIN SMAQPNFIDA QVCGSDVPRN QTSTKRGPIK 60 GKIDGMHMED QKGTFMGTGG GRTSEDGYSW RKYGQKQVKG SEYPRSYYKC TSLSCQVKKK 120 IERSHDGQIT EIIYKGAHNH PKTQSVRRAQ PDWCHDVPEI DDGNESCVKT EAGSGQKNNE 180 PGSDWRAEGM ERTSSPSVVT ELSDLLSTGQ GKPVVTVESV GTPELSSAVV SHEDDDDGII 240 IGGYTDEEES DSKRRKTESC MVEANMTSRA VRQPRVVVQI ESEIDILDDG YRWRKYGQKV 300 VKGNPNPRSY YKCTSPGCTV RKHVERASHN LKYVITTYEG KHNHQVPVAK NGNTLSSNSC 360 GLSSALSNLQ PGSALARGLS SLKQESQVQR SSSSVFNNSE YMRSSSFSGN LVSEMKVGGP 420 SLYPMNFPSV QSSMAYGSYG FNSNRTTPVH LPGSMASLIP QFPRSSLSSN LHTLGGIEML 480 NNGGGMGMGM GIMGQVHQPY FPAAAGGGGG GGGGQQLMMM PKQERRDDNV YNSSSTSSSV 540 LNQRIMGKFA S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-34 | 85 | 348 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-34 | 85 | 348 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10020215 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020539016.1 | 0.0 | probable WRKY transcription factor 34 isoform X1 | ||||
TrEMBL | M9TNR1 | 0.0 | M9TNR1_JATCU; WRKY transcription factor 10 | ||||
STRING | Lus10020215 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8349 | 34 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 4e-82 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Lus10020215 |