PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10020182

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Trihelix

Protein Properties

Length: 444aa MW: 50780.3 Da PI: 4.5398

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10020182	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.4	1.6e-12	58	131	1	75
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 +Wt +e l L+++ ++ + r + ++W++v++++ ++r+ qC+ekw++l +y +ik++++k ++ Lus10020182 58 EWTTKESLILVNVIVAIDGDWLRVLSSHQKWKSVADNCNLLDVRRNLYQCREKWSSLLSEYHRIKQWNSKAG-DQ 131 5********************************************************************963.33 PP
2	Myb_DNA-binding	21.9	4.1e-07	58	114	3	47
SS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqky 47 WTt E ++lv+++ g+ Wk++a + +R l+qc+++w ++ Lus10020182 58 EWTTKESLILVNVIVAIDGDwlrvlsshqKWKSVADNCNlldVRRNLYQCREKWSSL 114 7*****************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.399	51	115	IPR017877	Myb-like domain
Pfam	PF13837	2.3E-9	57	130	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.4E-4	57	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MEEAEPISDR ESSLEPKRRG KKPEPESKGA DVVEEEEDEV PPADRTTTRM TRSRATPEWT 60 TKESLILVNV IVAIDGDWLR VLSSHQKWKS VADNCNLLDV RRNLYQCREK WSSLLSEYHR 120 IKQWNSKAGD QGRDPPYWIL DREKRKLLEL PPSFDDEVFK AIDTYFSIKR EELDSDTETD 180 PEADAELLEV IAKLVGLGHI EPLFPASKSK RRKRCRAVLE IEGGLPEGLS RPCSPEENPP 240 INDLDENPEE SRVEETHPEE EHTHETYEPE EEEHTDETCE PENEQKQTSD KHVTIKDEEV 300 YESHVEEGIP REIPKGDKNG AAKEGISGEQ KAQSYESETS MPSEGEKTLS QGVARPYKRG 360 RKPKALVEEE KMVEEVLEKT QLMLSVATGS YPRETETRGD HLKGGEGSSE REFVRYEADK 420 LMECLGRIVN ILDRHPYLVE KYS*

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MEEAEPISDR ESSLEPKRRG KKPEPESKGA DVVEEEEDEV PPADRTTTRM TRSRATPEWT  60
TKESLILVNV IVAIDGDWLR VLSSHQKWKS VADNCNLLDV RRNLYQCREK WSSLLSEYHR  120
IKQWNSKAGD QGRDPPYWIL DREKRKLLEL PPSFDDEVFK AIDTYFSIKR EELDSDTETD  180
PEADAELLEV IAKLVGLGHI EPLFPASKSK RRKRCRAVLE IEGGLPEGLS RPCSPEENPP  240
INDLDENPEE SRVEETHPEE EHTHETYEPE EEEHTDETCE PENEQKQTSD KHVTIKDEEV  300
YESHVEEGIP REIPKGDKNG AAKEGISGEQ KAQSYESETS MPSEGEKTLS QGVARPYKRG  360
RKPKALVEEE KMVEEVLEKT QLMLSVATGS YPRETETRGD HLKGGEGSSE REFVRYEADK  420
LMECLGRIVN ILDRHPYLVE KYS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10020182

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10020182	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6732	26	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	1e-37	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Lus10020182