PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020117
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 654aa    MW: 74130.1 Da    PI: 8.3166
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020117genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.5e-09596640345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
      Lus10020117 596 VWSAVQERALVQALKTFPKDanqRWERVAAAVP-GKTVNQCKKKFA 640
                      6********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465657.07E-2091172IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.1E-2191194IPR001623DnaJ domain
SMARTSM002714.9E-1593168IPR001623DnaJ domain
CDDcd062574.01E-1394165IPR001623DnaJ domain
PROSITE profilePS5007618.63894176IPR001623DnaJ domain
PfamPF002261.5E-1794173IPR001623DnaJ domain
PRINTSPR006253.0E-899117IPR001623DnaJ domain
PRINTSPR006253.0E-8117132IPR001623DnaJ domain
PRINTSPR006253.0E-8148168IPR001623DnaJ domain
PROSITE patternPS006360153172IPR018253DnaJ domain, conserved site
SuperFamilySSF466893.2E-6452501IPR009057Homeodomain-like
PROSITE profilePS500905.355452495IPR017877Myb-like domain
SMARTSM007171.9E-4456509IPR001005SANT/Myb domain
CDDcd001670.00317459501No hitNo description
PROSITE profilePS5129311.093592647IPR017884SANT domain
SMARTSM007175.0E-9593645IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-5594639IPR009057Homeodomain-like
SuperFamilySSF466896.32E-9595649IPR009057Homeodomain-like
PfamPF002491.3E-7596639IPR001005SANT/Myb domain
CDDcd001677.20E-7597643No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MMVRNPLRLI SYSQELVDGQ PVFVSSNCFP VKAKNYDPAG HAFHAAALKL VGHEDAVHNK  60
DDSVSKDKEQ THMPSAESYS SKGKKKGTGD NQQDHYALLG LSHLRYLATE EQIRKSYREV  120
ALKYHPDKQA ALLLAEETEA AKQAKKEQIE SHFKAIQEAY EALIDPVKRR VYDSTDEFDD  180
EVPTDCAPQD FFKVFGPAFV RNGRWSVSQP VPPLGDDATP FKEVDIFYDF WYSFKSWREF  240
PHEDEFDLED AESRDHKRWM ERQNAKLSEK ARKEDYARIR TLVDNAYRRD PRIQKRKEEE  300
KAEKQRKKEA KYLAKKLQEV EAAKAAEEEQ RRKEEEGKRA AEAALLQKKV KEKEKKLLRK  360
ERARLRTLSA PVLAGRFLGV TEDDVENLCM SLDTEQMRSL CEKMEGQESL EKASLLKNAC  420
GHEQEAENHK GDQKKMAQQN GPVSNGGFHG SSYRSKEKPW LREEIELLRK GMLKFPKGTS  480
RRWEVISDYI GTGRSVEEII KATKTVLLQK PDSAKAFDSF LEKRKPAVSI ASPLTTREEV  540
ELVNPQSSED NAAKVDNTEE SPSGSSDNPK TDDGNSATNT TPSSASSSSS SSEQDVWSAV  600
QERALVQALK TFPKDANQRW ERVAAAVPGK TVNQCKKKFA LLKESFRSKK STA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A7e-1919029420124Zuotin
5dje_B7e-1919029420124Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020117
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299170.20.0dnaJ homolog subfamily C member 2
RefseqXP_024442936.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A2K2BRW20.0A0A2K2BRW2_POPTR; Uncharacterized protein
STRINGLus100201170.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain