PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10020105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | CO-like | ||||||||
Protein Properties | Length: 353aa MW: 38099.5 Da PI: 5.6292 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27.9 | 4.7e-09 | 4 | 43 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ +++ ++ +fC+ ++ +lC +C +++H H Lus10020105 4 KLCDSCKSAPAAIFCRPDSAFLCVSCDSKIHAAnklasrH 43 58*****************************554555555 PP | |||||||
2 | zf-B_box | 27.8 | 5.1e-09 | 46 | 91 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ Lus10020105 46 VWVCEVCEQAPAHVTCKADAAALCVSCDRDIHSAnplarrHERVPI 91 689*****************************66899999*99997 PP | |||||||
3 | CCT | 69.7 | 7.2e-24 | 289 | 332 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Lus10020105 289 REARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRK 332 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.367 | 1 | 48 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.1E-14 | 1 | 48 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.4E-6 | 4 | 43 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.05E-9 | 5 | 48 | No hit | No description |
PROSITE profile | PS50119 | 10.893 | 44 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-7 | 46 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.40E-9 | 47 | 91 | No hit | No description |
SMART | SM00336 | 8.8E-11 | 49 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 5.6E-18 | 289 | 331 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.896 | 289 | 331 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MASKLCDSCK SAPAAIFCRP DSAFLCVSCD SKIHAANKLA SRHPRVWVCE VCEQAPAHVT 60 CKADAAALCV SCDRDIHSAN PLARRHERVP IVPFYASVSS GDTPTAVKSS AAAAAVAVNF 120 LDDRYFANDV DGDDDVSREE AEAASWLLPN PGSNKAMDNQ SSDPELNTGQ FLFGEMDPYL 180 DLDYGTTVDP KIEAQEQNSS GSDGVVPHVG GGHAPVMNMN DHYFEFDFSA DGSKAFAAYG 240 YTAQCLSHSV SSSSIDVGVV PEGCAMTEMS NPAADSAVSQ AVPLSAADRE ARVMRYREKR 300 KNRKFEKTIR YASRKAYAET RPRIKGRFAK RKDMEVEADR SMYGSFGVVP SF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10020105 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012076376.1 | 1e-165 | zinc finger protein CONSTANS-LIKE 4 | ||||
Swissprot | Q940T9 | 1e-137 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A067KBG6 | 1e-164 | A0A067KBG6_JATCU; Uncharacterized protein | ||||
STRING | Lus10020105 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1302 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 1e-132 | CONSTANS-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Lus10020105 |