PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020011
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-PHD
Protein Properties Length: 652aa    MW: 74031.9 Da    PI: 8.8203
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.38e-06460498745
                  --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS
     Homeobox   7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45 
                  + ++ +e L ++Fe+n  ps++ +++L++++gL+  +V+
  Lus10020011 460 IPQSAVEKLRQAFEENELPSRKVKQKLSEEMGLEPGKVR 498
                  6678899***************************98886 PP
2PHD35.22.9e-12192246150
                  SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
          PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                  +C+ C++     +++++lCd +C+ ++H+ Cl+++l +e++p g   w+C+ C++
  Lus10020011 192 FCAKCKSneVVRDNDIILCDgTCNCAYHQMCLEPPLHTENIPPGdqGWFCKFCER 246
                  6999**966566********56********************9999*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.59E-13184249IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.3E-12188247IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.344190247IPR019787Zinc finger, PHD-finger
PfamPF006281.4E-9192246IPR019787Zinc finger, PHD-finger
SMARTSM002495.3E-7192245IPR001965Zinc finger, PHD-type
CDDcd155043.81E-29192244No hitNo description
PROSITE patternPS013590193244IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.8E-9443520IPR009057Homeodomain-like
PROSITE profilePS5007110.43451526IPR001356Homeobox domain
SMARTSM003891.9E-6453530IPR001356Homeobox domain
CDDcd000861.28E-5454528No hitNo description
SuperFamilySSF466895.26E-7457522IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MSNPSLKAIR SVISKKKKVG RPSSNLSRKG ARSRKLIRGK SMNKQVHQSS SKKSDLSETR  60
CEPASATYSE INDKNESKGT KRKFKRRTLT EKRKHKEELD EPSRLQRRTR YLMIRMKMEQ  120
NLIDAYSGEG WKGHSREKIR PEKELLRAKK QILKCKLGIR DAVHQLDMLS NVGCIEESVM  180
AADGSVSHEH IFCAKCKSNE VVRDNDIILC DGTCNCAYHQ MCLEPPLHTE NIPPGDQGWF  240
CKFCERRMEI IDSMNAHLGT RFSMACNWKV DIFTEEAATP DGGNILTLEE EWPSDDSQDD  300
DYDPERREKS MSGAGTDNHV ADSASSSTSL GWSSDDEALP ESKRLQLEGM DVRSHSIYSS  360
LDSEEVSDIE IVHGRRRRRA VDYRKLYDEM FGKDAPVADQ LSEDEDWGPS KRTRRAKESD  420
AASTLMNLYQ NEKIGEKAEI GEGKKEVPQD SQVRRALSRI PQSAVEKLRQ AFEENELPSR  480
KVKQKLSEEM GLEPGKVRTS VSRFIAPSVV KVSKWFKNAR YMALKSRKVD KTTGSSDSTP  540
MLSEAADDVK KGGSEGPEVV NDIETEPGLR TRRTSEHVST MTKLLSKYEV KENDPAKSQV  600
GYSEVLMKNY SVFFFLVSFL LKCGCLVNFS DTLSERIRRW FKQFLLQCLR L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18093KRKFKRRTLTEKRK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020011
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068466.10.0pathogenesis-related homeodomain protein
SwissprotP487851e-139PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A2C9UM350.0A0A2C9UM35_MANES; Uncharacterized protein
STRINGLus100200110.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-137pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]