PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019977
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 142aa    MW: 16135.7 Da    PI: 10.1077
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019977genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.53.1e-1044137698
                  ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++ + l+sg++ +p   +++  +++   ++tl++  ++   + +++l+  k+++r +++ GW + +  ++L++gD+++++l++ ++  ++v++f 
  Lus10019977  44 ITRHQLQSGNMDFPAGITDSSyMNEDLLKVTLRVLGKEEvDERNFTLSEAKRDRRKYIS-GWMGLCTKHKLEAGDVCLLELVDPETNVFNVHIFH 137
                  56677777888888888777654454566777777755568888888888888888888.*********************98888888999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-1333138IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-1233138IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.1E-840139IPR003340B3 DNA binding domain
PfamPF023622.9E-843137IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MKKSTIVKTK RFQFRFMKLS AATQRAIRTA IDSDPKNPSF MIVITRHQLQ SGNMDFPAGI  60
TDSSYMNEDL LKVTLRVLGK EEVDERNFTL SEAKRDRRKY ISGWMGLCTK HKLEAGDVCL  120
LELVDPETNV FNVHIFHAGR G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019977
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100199771e-102(Linum usitatissimum)