PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10019949

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

TCP

Protein Properties

Length: 394aa MW: 41778.9 Da PI: 6.6181

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10019949	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	30	1.8e-09	210	260	46	95
TCP 46 ktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 +tie Llqqa+pai+++tgt++++a+++ ++s +ss+s+ s+++++++ + Lus10019949 210 ETIEGLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPASKSAPH 260 9************************99988888888888666663333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.7E-8	210	376	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MELTDLQNNN NNNNSNKQQQ QQQQPNNNSS QEPHHHPHHH LQYQQFRFDG RSPIGGGGGG 60 GGGPSHSPFM GSISFQPVSM SRPPLHLQQH TSTSSSSSSS PSTTPSSSAP SPHLVDASLA 120 ISTRSGSLPS DSTAHKQINE QSTNHHNLAI VPAATNTTTA GGGGPKEAGK DRENIFVGRX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXE TIEGLLQQAE PAIIAATGTG TIPANFSTLN 240 VSLRSSGSTL SAPASKSAPH SFHAAAAAGP TEAQMWPFST SAGNTPPIQA PLHFMPRFNL 300 SPQNLDFQGG RASPLQLGSM VMPPPPTTQA PSQHLGLGMS ESNLGMLAAL NAYSRGGLNA 360 SSEHSHHHHH QQQQQQTNSE NDDDEEEDPN SSQ*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MELTDLQNNN NNNNSNKQQQ QQQQPNNNSS QEPHHHPHHH LQYQQFRFDG RSPIGGGGGG  60
GGGPSHSPFM GSISFQPVSM SRPPLHLQQH TSTSSSSSSS PSTTPSSSAP SPHLVDASLA  120
ISTRSGSLPS DSTAHKQINE QSTNHHNLAI VPAATNTTTA GGGGPKEAGK DRENIFVGRX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXE TIEGLLQQAE PAIIAATGTG TIPANFSTLN  240
VSLRSSGSTL SAPASKSAPH SFHAAAAAGP TEAQMWPFST SAGNTPPIQA PLHFMPRFNL  300
SPQNLDFQGG RASPLQLGSM VMPPPPTTQA PSQHLGLGMS ESNLGMLAAL NAYSRGGLNA  360
SSEHSHHHHH QQQQQQTNSE NDDDEEEDPN SSQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10019949

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ887111	6e-79	HQ887111.1 Linum usitatissimum clone GMU2AYZ01BBPUQ microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5Q4R2	6e-50	A0A2P5Q4R2_GOSBA; Uncharacterized protein
STRING	Lus10019949	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	5e-16	TCP family protein

Link Out ? help Back to Top
Phytozome	Lus10019949