PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019940
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 653aa    MW: 72377.3 Da    PI: 7.605
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019940genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-2395196199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +++ 
  Lus10019940  95 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSAFVNHKKLVAGDSIVFL--RAENGD 188
                  89****************************997556555..89***********************************************..448899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Lus10019940 189 LCVGIRRA 196
                  9****997 PP
2Auxin_resp113.42.2e-37258341183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa++a+++++FevvY+Pras++eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp++Wp+S+Wr+L+
  Lus10019940 258 AATRAANGQPFEVVYYPRASAPEFCVKASLVKSALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVHFADPLHWPDSPWRLLQ 341
                  78999*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-3787199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-2988201IPR015300DNA-binding pseudobarrel domain
CDDcd100175.30E-2294195No hitNo description
PfamPF023621.6E-2195196IPR003340B3 DNA binding domain
SMARTSM010192.3E-2195197IPR003340B3 DNA binding domain
PROSITE profilePS5086313.0795197IPR003340B3 DNA binding domain
PfamPF065075.1E-32258341IPR010525Auxin response factor
PROSITE profilePS5174514.023561639IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MPPVNSKVFY FPQGHAEHST GPVNFRTTLP NLRPYILSRI SAIKFMADPD TDEVYAKMKL  60
APVTSSGDSS DFDDDQGLLN GEGPENNNKQ APTSFAKTLT QSDANNGGGF SVPRYCAETI  120
FPRLDYTADP PVQTILAKDV HGETWKFRHI YRGTPRRHLL TTGWSAFVNH KKLVAGDSIV  180
FLRAENGDLC VGIRRAKRGI GGGPESSWNP AGGNNYGGFS SFLREEENKL LRNGNNGNNG  240
SSNLMGRGKV RPDSVIEAAT RAANGQPFEV VYYPRASAPE FCVKASLVKS ALQIRWCSGM  300
RFKMAFETED SSRISWFMGT ISSVHFADPL HWPDSPWRLL QVAWDEPDLL QNVKRVSPWL  360
VELVSNMPAI HLSPFSPPRK KLRLPHHPDF PLEGQFPMPM FTGNLIGHHH SSPFGCLADH  420
NTTTPAGMQG ARHAHYGLPL SDLQHFNNKI QTMGHLFPPL VQQQQHMIVP KPSMSSESIS  480
CLLTMGNSTN QSTTPKDKPN EAKAVHQFVL FGKPILTEQQ ISLSSSGDTV SPNHNRNNSS  540
DGPEPSPARE GSNHLEIEQA SHQCRVFFES DEVGHPLDLS SMRSYDELHR KIAEMFQVEN  600
PETLHNILYG DLGGIVRHIG DEPYCDFARN ARRLTVLSDS SSDNVGRTRQ KK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-73136266388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519531.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLB9S0L20.0B9S0L2_RICCO; Auxin response factor
STRINGLus100199400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]