PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019898
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 421aa    MW: 46035.2 Da    PI: 7.5779
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019898genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.5e-32189245360
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+g+H h+k
  Lus10019898 189 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSF-DGQIAEIVYKGDHSHPK 245
                  9***************************************.***************85 PP
2WRKY99.91.5e-31342399259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK+v+g+++prsYYrCt  +C+v+k ver+ +dp+++++tYeg+Hnhe
  Lus10019898 342 GDGFRWRKYGQKVVRGNPYPRSYYRCTNLKCTVRKYVERAPDDPTTLVTTYEGKHNHE 399
                  5********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-29182246IPR003657WRKY domain
SuperFamilySSF1182902.09E-25183246IPR003657WRKY domain
SMARTSM007741.6E-35187245IPR003657WRKY domain
PfamPF031066.0E-25189244IPR003657WRKY domain
PROSITE profilePS5081123.296189246IPR003657WRKY domain
PROSITE profilePS5081132.466336401IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-30337401IPR003657WRKY domain
SuperFamilySSF1182901.7E-27338401IPR003657WRKY domain
SMARTSM007743.0E-36341400IPR003657WRKY domain
PfamPF031061.2E-24343399IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MLKGLVGKLV ETLREEGVPF ISTILDFLLT VTGTFAELKR KTPLSDISAM EMKETEKLVI  60
AKPVPSRPTS STFGSSIILP LQPNSQDEAS PPTNIIYKPQ AKLVSKRTAS LLANMGNNFN  120
STRDPELATR SNASSNDDAE EAAAVHQGTE RLTISTEEEE EDDDDPKTAA SSVQVAGGHV  180
VDHSRPSYDG YNWRKYGQKQ VKGSEYPRSY YKCTHPNCPV KKKVERSFDG QIAEIVYKGD  240
HSHPKPLPPP PPQQHKRNSN AGGNCRNDEQ VCGTAGGEIL TGTGLPANAV VEFEGGSSRG  300
GGLIQGDHDE PRSKRRRVED QVNDPSGIAA AQEPGTDPEI LGDGFRWRKY GQKVVRGNPY  360
PRSYYRCTNL KCTVRKYVER APDDPTTLVT TYEGKHNHEM PSRTEPDTSS SRSSASRAKP  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-281894021578Probable WRKY transcription factor 4
2lex_A7e-281894021578Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313317KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019898
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891563.11e-108WRKY transcription factor 44
RefseqXP_021891564.11e-108WRKY transcription factor 44
TrEMBLA0A2C9VC551e-102A0A2C9VC55_MANES; Uncharacterized protein
STRINGLus100198980.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.15e-65WRKY DNA-binding protein 3