PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019368
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Nin-like
Protein Properties Length: 921aa    MW: 101492 Da    PI: 6.0062
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019368genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.94.8e-29575626152
       RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++
  Lus10019368 575 AEKTVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 626
                  5899**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.177558646IPR003035RWP-RK domain
PfamPF020423.3E-26578626IPR003035RWP-RK domain
SuperFamilySSF542771.37E-21812903No hitNo description
SMARTSM006662.8E-19820902IPR000270PB1 domain
PROSITE profilePS5174521.199820902IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.0E-23821902No hitNo description
PfamPF005641.0E-16821901IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 921 aa     Download sequence    Send to blast
MEYSFSSKVK GDEFSAEIAS PVDGHSRNSI LGDTGDKFVE LMNLDTYPGW CNGSSAMEHL  60
FVSNDLSSLQ PFPLGSFDTL NLAEQPSYLF PNGNESDGAG TSHDCGDKIT CEKNDSQFVY  120
SSPSSAENGF VSNGSNQQKN IMEEDVNCIV SCPVRCSLDE KMLKALSFLR EFSGDGILAQ  180
VWVPVRQGDQ YVLTTSNQPY LLDKILAGYR EVSRTFTFSA DLQSGLPLGL PGRVFISKVP  240
EWTSNIVHYN KAEYVRVNHA VDHDVRGSVA LPILEPSNIS CCAVLELVTI KEKSDFDSEM  300
KNICKALQAV NLRSTLPPRL LPEIRDVLRA VCHAHKLPLA LTWIPCYYTE ESLDKIERVC  360
VREGDSRPTG KCVLCIEDTA CYVNDISMQG FVHVCVEHYI EEGQGISGKA LQSNHPFFIP  420
DVKTYDISEY PLVHHTRKYG LNAAVAIRLR STYTGDHDYI LELFLPVNIT RSQEQQLLLN  480
NLSSTMQKIC RSLRTVSDAE LAAGVGNGLG YQKESIPIFP EISRTERNSK SPLSSVNLNT  540
VGKMDFNASS CRINRIESRA MVGSRKQLEK KRRTAEKTVS LSVLQQYFSG SLKDAAKSIG  600
VCPTTLKRIC RQHGISRWPS RKINKVNRSL RKIQTVLDSV QGVEGGLKFD PGTGGFMAAG  660
AMVDEFDSDG RTLFPNNSIP AQHSEPLAEC VAVEGSTSTD KVDDSSTATV RRAAKESSSP  720
LVYASEDSKS QQFGFHEAMS PPRWFAGDAE AEKTSSQHRS WSSSSLAGGE ENDTIDHNQL  780
GCSSSSHGSE SAAKPGCSSS SQSFKEGRHP RSQGQSSGWK ITMKATYKED TIRFKFETRA  840
GCFQLYKEVG KRFKLQTGTF QLKYLDDEEE WVLLTSDSDL QECCEILDYT EKESVKLAVR  900
DTPFETGSSG SSNCFLAGSS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019368
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021692595.10.0protein NLP8-like
RefseqXP_021692596.10.0protein NLP8-like
RefseqXP_021692597.10.0protein NLP8-like
TrEMBLA0A067L9J40.0A0A067L9J4_JATCU; Uncharacterized protein
STRINGLus100193680.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34643465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein