PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019247
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 347aa    MW: 38177.8 Da    PI: 6.866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019247genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12167213455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+++ ++f  L  ++P +     kK +Ka++L  A++Y+k+Lq
  Lus10019247 167 DHVMAERNRREKLSERFIALSAVIPGL-----KKTDKASVLGDAIKYLKQLQ 213
                  699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.288163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-16167225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9167213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-16168226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-12168214No hitNo description
SMARTSM003531.5E-14169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEDPSFNYQY QSPFNFSIDD FDFDHHSFTP ANCSMRFPNE EAAVNNPPLI ISPQSFTTTS  60
QSSDMNNNSR PAKIPKTTSD SRASPPSSSS SPYSCIISFD SSSSTDSVPA VPQKPPRSSY  120
PPAAVKPEYA SIENGLQYGC SVLNNAASHG TKRPAAAMSR SPISAQDHVM AERNRREKLS  180
ERFIALSAVI PGLKKTDKAS VLGDAIKYLK QLQERAKTLE EQVKNKTIES VVYVKKSRVY  240
NLDDDELSSS TVENSDGFSS NQSLQLPEIE ARVSGKDVMI RIHCEKQRGC LPKLLCEIEK  300
LHLNVMNSNV LPFGSSTLDI TVIAQMDHDF STTTVDLVRN LRKALT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019247
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021692404.11e-101transcription factor bHLH25-like
TrEMBLA0A2C9UQF53e-98A0A2C9UQF5_MANES; Uncharacterized protein
STRINGLus100192470.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-67bHLH family protein