PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019089
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 387aa    MW: 43996.4 Da    PI: 6.1155
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019089genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.31.1e-24953145
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 kr en+snrqvt+skRr+gilKKA+ELS+LCd+++++++fs+tg+
  Lus10019089  9 KRLENTSNRQVTYSKRRHGILKKAKELSILCDIDILLLMFSPTGR 53
                 789****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.226161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-27294IPR002100Transcription factor, MADS-box
CDDcd002662.70E-29283No hitNo description
PRINTSPR004047.2E-20323IPR002100Transcription factor, MADS-box
PfamPF003198.4E-211156IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGRVKLKIKR LENTSNRQVT YSKRRHGILK KAKELSILCD IDILLLMFSP TGRPTLFNGE  60
RGIEDVIAKF AQLTPQDRAK RKMESLETLK KTFKKLDHDV NIQAFFGARG QTVEEVTDQV  120
RLMQAEVTEL DRRLSYWMDP EKIDSIEQIQ QMEASIRESL SRISLHKENI KNHQLMSLDC  180
SSQFQNGLQL PLMMNGLHNT NSLSWLVNNG NQNFVLTNEP NALHHSSMMH NYKDDHRDME  240
CSTESSAPGC HGFFSSEKQP EIGNPALMDN MGQQAGHFNE LGSSSRLNLQ LGEQFPYHGY  300
GSLCLAADDK KFELQMGNNL NENHNVYEVN NNNEVEIPRP MYEDGHNNWI PAVDGPSGVA  360
ILDQNPPYPQ VQEPHFSYSE CYSANN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-14191190Myocyte-specific enhancer factor 2B
1tqe_Q3e-14191190Myocyte-specific enhancer factor 2B
1tqe_R3e-14191190Myocyte-specific enhancer factor 2B
1tqe_S3e-14191190Myocyte-specific enhancer factor 2B
6c9l_A3e-14191190Myocyte-specific enhancer factor 2B
6c9l_B3e-14191190Myocyte-specific enhancer factor 2B
6c9l_C3e-14191190Myocyte-specific enhancer factor 2B
6c9l_D3e-14191190Myocyte-specific enhancer factor 2B
6c9l_E3e-14191190Myocyte-specific enhancer factor 2B
6c9l_F3e-14191190Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019089
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572064.11e-150agamous-like MADS-box protein AGL65 isoform X1
SwissprotQ7X9I06e-90AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLB9RLX31e-146B9RLX3_RICCO; Mads box protein, putative
STRINGLus100190890.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.12e-81AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]