PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019007
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GeBP
Protein Properties Length: 402aa    MW: 44808.1 Da    PI: 4.8526
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573114.85.3e-36117211297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  lfqrlw++eDei lLqG+++++a++g   + d+  fy+++k++++++++ksqlveK+rrLKkK+++  +k++sgk++sf+++hdq +fe+s+kiW 
  Lus10019007 117 LFQRLWTDEDEIELLQGFLEYTAHRG-GIHYDTAMFYDQIKSKLQLDFNKSQLVEKLRRLKKKYRNVLAKIDSGKDFSFKSPHDQITFEISSKIWS 211
                  79************************.8899****************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-33118211IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSTAVQDDAV FDHDRNDDDS PSQDDDFDDL ENDDFLAVEE DDEDLNFISP PTLVTPAPPV  60
AVPSASLVTV AADPHKFAAE MSSSAVLPEA KRQRTEAMMI VPLDERKPQP LDKSRQLFQR  120
LWTDEDEIEL LQGFLEYTAH RGGIHYDTAM FYDQIKSKLQ LDFNKSQLVE KLRRLKKKYR  180
NVLAKIDSGK DFSFKSPHDQ ITFEISSKIW SSTGKLAAVE DGNLEEEGNP NLNYNSMNSF  240
GEINQKSTPT PQRKRSRSRS LATPLILGRC GGGGFSVDDG GNLRGKVDDK PVLNHGVASN  300
NGVSNNSHHH HGNVNVGSLI EEAVKSCLSP LFKELLKNKA MVSGGGRGIE SLAMLSNFEG  360
VEMMGDEKWR KQQIMELEVY SKRLELVQDQ IRSQLEELRS I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253258KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012089211.11e-122probable transcription factor At3g04930
TrEMBLA0A067JI481e-120A0A067JI48_JATCU; Uncharacterized protein
STRINGLus100190070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.17e-72DNA-binding storekeeper protein-related transcriptional regulator