PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018859
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GeBP
Protein Properties Length: 267aa    MW: 30009.2 Da    PI: 9.8708
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018859genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.79.7e-3559151298
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                  lfqrlwse+Dei+lL G+i+f++k+ ++p+ d+ +fy+f+kks+s++vs+sql eKi rL++Kf k  +    g+++sfsk+hd+++f+lskkiWg+
  Lus10018859  59 LFQRLWSEDDEIALLSGMIEFTEKKRVDPTRDLAGFYDFIKKSLSVEVSQSQLKEKIGRLRRKFSKANE----GEDKSFSKAHDREVFDLSKKIWGT 151
                  79**************************************************************87655....59********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.4E-3160150IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEDSQAKSSK PKAKPAPATP VSKLTAATGK RAAVGGETDE SKDVKRRKEE NTEDTKKQLF  60
QRLWSEDDEI ALLSGMIEFT EKKRVDPTRD LAGFYDFIKK SLSVEVSQSQ LKEKIGRLRR  120
KFSKANEGED KSFSKAHDRE VFDLSKKIWG TSKKQAEPSN RKGKVVNNGD SCKLAAIKAD  180
LGIGNGKEDK MEIEKHEPLK GNFNMDWYED MGKFVAMKGL DFVEGSKRGE LEKRWKEVKA  240
ASLDLLVKRS QLMIDQAKLM LDAMED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14147KDVKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018859
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021667837.13e-73GLABROUS1 enhancer-binding protein-like
RefseqXP_021690494.13e-73GLABROUS1 enhancer-binding protein-like
RefseqXP_021690495.13e-73GLABROUS1 enhancer-binding protein-like
RefseqXP_021690496.13e-73GLABROUS1 enhancer-binding protein-like
STRINGLus100188590.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.14e-30DNA-binding storekeeper protein-related transcriptional regulator