PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018810
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 383aa    MW: 42072.2 Da    PI: 5.3543
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018810genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.54.9e-14141177128
          NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104
                  F+ t ee+  + L+k ++g++l+  +v++++  y + P++Lp      ++ wy  sk+++        n+ t +g+Wk +g++ e+++ ++  +g + 
  Lus10018810  14 FDGTPEEIC-KSLHKVMRGSPLPS-NVVDDICPYVHAPSNLP------SDIWYLISKSAE--------NKDTGKGFWKLKGESLELFT-DSVITGWRS 94 
                  666777776.7799999****999.99**************9......246888877655........667999**************.999****** PP

          NAM 105 tLvfykgrapkgektdWvmheyrl 128
                  t+ +y+g++pk +kt+W+m++y +
  Lus10018810  95 TFEYYEGKEPK-VKTNWLMQQYWV 117
                  ***********.8*********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.2278140IPR003441NAC domain
SuperFamilySSF1019419.42E-2014140IPR003441NAC domain
PfamPF023651.0E-714115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MCPPALIPIA DIGFDGTPEE ICKSLHKVMR GSPLPSNVVD DICPYVHAPS NLPSDIWYLI  60
SKSAENKDTG KGFWKLKGES LELFTDSVIT GWRSTFEYYE GKEPKVKTNW LMQQYWVTEK  120
DVCESSKAKE SSSLCRVFLE RDHVEDKRNC VATPLVSDEG VALRRLITSS VCSSASTSKA  180
EGDSIAVADV WANLLDECFA GGDYLEMLDL AVPASSSSGT DNSSCMSISS DEYFDSWALL  240
REIESDSIQD SVQKTGECKL NVSTTCKPEE LIMNPGSSVS IVSTRETEGP SEQVARTGPS  300
LCDISEQHKY INDKAKQKQK QQQQQASRKH KLADKDKGSS SDSSHGGSSS GASRDVEKKG  360
SKGILKKRKN KYLCFMPFNF VF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100188100.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105882235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.22e-12NAC domain containing protein 41