PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018776
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 336aa    MW: 37043 Da    PI: 10.1857
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018776genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31269326359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Lus10018776 269 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 326
                  99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.1E-16221265IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-33255327IPR003657WRKY domain
PROSITE profilePS5081130.067262328IPR003657WRKY domain
SuperFamilySSF1182903.27E-27265327IPR003657WRKY domain
SMARTSM007742.0E-38267327IPR003657WRKY domain
PfamPF031062.7E-27269326IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEEVEQANRE AIESCNMVLS LLSSQKPQDQ LQHYKNLMVE TEEAVSKFKK VVSLLNTGLG  60
HARVRKVNNF PSSALSHHNI VLDRQKQPSK SLQFPHQEIG STSAKTALSL GSGGGNPSLE  120
LSSNGKNGAQ QTTTSSHYLF LQQQQMQRLQ LEQRQQQMKQ QAEMMFRKSN SSGISLSFDN  180
SLTISSSRSF MSSLSMDGSV ANTVGSGAFN LIGGVPLHHK MKCCAKGEDG SVKCGSSGRC  240
HCSKKRKHRV KRSIKVPAVS NKLADIPPDD YSWRKYGQKP IKGSPHPRGY YKCSSMRGCP  300
ARKHVERCLE EPSMLIVTYE GEHNHPRIPS QSANT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-202633291075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018776
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8304560.0EU830456.1 Linum usitatissimum clone LU0017D02 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520995.11e-146probable WRKY transcription factor 21
SwissprotO043361e-108WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLB9S4T81e-144B9S4T8_RICCO; WRKY transcription factor, putative
STRINGLus100187760.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.18e-75WRKY DNA-binding protein 21