PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10018741 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | HB-PHD | ||||||||
Protein Properties | Length: 778aa MW: 85659.6 Da PI: 4.6411 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 40.4 | 5e-13 | 627 | 669 | 10 | 52 |
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++L + F +nryp+++++e+LAk+l+Lt rqV WF N R Lus10018741 627 ATIQRLRQSFVENRYPNHSTKEKLAKELELTVRQVGKWFENAR 669 5689*************************************99 PP | |||||||
2 | PHD | 34.7 | 4e-12 | 200 | 255 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C++ + e++++lCdg C++ fH+ Cl ++l +e++p + wlC+ C++k Lus10018741 200 YCAKCQSkeVTLENDIILCDGaCDRGFHQFCLVPHLLNEDIPPDdeGWLCPGCDCK 255 7******65455********66*******************99999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 5.54E-12 | 190 | 258 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.1E-11 | 196 | 255 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.585 | 198 | 255 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 5.52E-26 | 200 | 252 | No hit | No description |
SMART | SM00249 | 8.4E-9 | 200 | 253 | IPR001965 | Zinc finger, PHD-type |
Pfam | PF00628 | 2.1E-9 | 200 | 255 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 201 | 252 | IPR019786 | Zinc finger, PHD-type, conserved site |
SuperFamily | SSF46689 | 1.84E-11 | 612 | 672 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.2E-9 | 613 | 679 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 13.151 | 615 | 675 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-13 | 624 | 688 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-10 | 627 | 669 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.87E-11 | 629 | 669 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 778 aa Download sequence Send to blast |
MSESSPHSDD QKSTNNKQFK TTSTQIVSSP SCLERWAKGT PKSNKKSMST PSADSDRKLR 60 SKSQDKQKAT ESSGKQKATE SSGKPANVSS DREKRRRTKI RSKEAVTNEY KRIRSHLRYL 120 LQRMKFEQSL IVAYSGEGWK GQNLEKLKPE KELQRASSDI FRLKTKVREL FKHIDSLCAE 180 GSFPASLFDS DGEISSEDIY CAKCQSKEVT LENDIILCDG ACDRGFHQFC LVPHLLNEDI 240 PPDDEGWLCP GCDCKVDCIG FLNDYLGTNL SIGDSWEKVF PEAAATASAP DIGSTFGLPS 300 DDSDDGDYDP DDPELEQKNE VDGSGSDESD FTSASEELGV SNNEKLLGLP SDDSEDDDYN 360 PNDPYLDETV KEEDESSGSD FSSDSEDLDA ILENDGQPRA EGNLSCVQLG KTKNRSLNNE 420 LLSTSNPVDV VDGSHIVKYL GLPSDDSEDD DYNPDGPSPD ETMKQESSGS DFSSDSEYLD 480 AVLENDELPG VNGNHSFVEL NGMKNQSLTN EPSSTSKAVE GIDGSLSLTR KRNVERLDYK 540 KLFDETYGNG SSDSSDDEDY TGTVRQKIRK LSTETAPFST SRTDVVSKSA LKSLEIKKSL 600 GDNDDQGSSL STPIRKRNAI YKKLGEATIQ RLRQSFVENR YPNHSTKEKL AKELELTVRQ 660 VGKWFENARW NYNHPADRAS KRSSAKDSPA VPSTDDNKQF GNDVGKFNVG KNEDTVKKND 720 DVAERLQGQV ASKSVSRGRK RKPGKQMMGE EAISGTAASS PTTPPVIVLG LRAHRGE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 737 | 745 | GRKRKPGKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10018741 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU830464 | 2e-67 | EU830464.1 Linum usitatissimum clone LU0017E08 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10018741 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8437 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 7e-89 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |
Link Out ? help Back to Top | |
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Phytozome | Lus10018741 |