PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018741
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-PHD
Protein Properties Length: 778aa    MW: 85659.6 Da    PI: 4.6411
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018741genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.45e-136276691052
                  HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
     Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                    +++L + F +nryp+++++e+LAk+l+Lt rqV  WF N R
  Lus10018741 627 ATIQRLRQSFVENRYPNHSTKEKLAKELELTVRQVGKWFENAR 669
                  5689*************************************99 PP

2PHD34.74e-12200255151
                  SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
          PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                  +C+ C++   + e++++lCdg C++ fH+ Cl ++l +e++p +   wlC+ C++k
  Lus10018741 200 YCAKCQSkeVTLENDIILCDGaCDRGFHQFCLVPHLLNEDIPPDdeGWLCPGCDCK 255
                  7******65455********66*******************99999*******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.54E-12190258IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.1E-11196255IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.585198255IPR019787Zinc finger, PHD-finger
CDDcd155045.52E-26200252No hitNo description
SMARTSM002498.4E-9200253IPR001965Zinc finger, PHD-type
PfamPF006282.1E-9200255IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590201252IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF466891.84E-11612672IPR009057Homeodomain-like
SMARTSM003899.2E-9613679IPR001356Homeobox domain
PROSITE profilePS5007113.151615675IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-13624688IPR009057Homeodomain-like
PfamPF000461.4E-10627669IPR001356Homeobox domain
CDDcd000866.87E-11629669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MSESSPHSDD QKSTNNKQFK TTSTQIVSSP SCLERWAKGT PKSNKKSMST PSADSDRKLR  60
SKSQDKQKAT ESSGKQKATE SSGKPANVSS DREKRRRTKI RSKEAVTNEY KRIRSHLRYL  120
LQRMKFEQSL IVAYSGEGWK GQNLEKLKPE KELQRASSDI FRLKTKVREL FKHIDSLCAE  180
GSFPASLFDS DGEISSEDIY CAKCQSKEVT LENDIILCDG ACDRGFHQFC LVPHLLNEDI  240
PPDDEGWLCP GCDCKVDCIG FLNDYLGTNL SIGDSWEKVF PEAAATASAP DIGSTFGLPS  300
DDSDDGDYDP DDPELEQKNE VDGSGSDESD FTSASEELGV SNNEKLLGLP SDDSEDDDYN  360
PNDPYLDETV KEEDESSGSD FSSDSEDLDA ILENDGQPRA EGNLSCVQLG KTKNRSLNNE  420
LLSTSNPVDV VDGSHIVKYL GLPSDDSEDD DYNPDGPSPD ETMKQESSGS DFSSDSEYLD  480
AVLENDELPG VNGNHSFVEL NGMKNQSLTN EPSSTSKAVE GIDGSLSLTR KRNVERLDYK  540
KLFDETYGNG SSDSSDDEDY TGTVRQKIRK LSTETAPFST SRTDVVSKSA LKSLEIKKSL  600
GDNDDQGSSL STPIRKRNAI YKKLGEATIQ RLRQSFVENR YPNHSTKEKL AKELELTVRQ  660
VGKWFENARW NYNHPADRAS KRSSAKDSPA VPSTDDNKQF GNDVGKFNVG KNEDTVKKND  720
DVAERLQGQV ASKSVSRGRK RKPGKQMMGE EAISGTAASS PTTPPVIVLG LRAHRGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1737745GRKRKPGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018741
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8304642e-67EU830464.1 Linum usitatissimum clone LU0017E08 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100187410.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.17e-89Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain