PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10018723 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 125aa MW: 13775.5 Da PI: 8.7804 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22 | 3e-07 | 63 | 90 | 5 | 31 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C. CS HLH 5 hnerErrRRdriNsafeeLrellPk.as 31 h Er RR+r+++ f +L+ llP+ +s Lus10018723 63 HIWTERERRKRMRTMFTNLQALLPQlPS 90 6668*********************443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.91E-7 | 57 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.13E-5 | 58 | 91 | No hit | No description |
PROSITE profile | PS50888 | 8.632 | 58 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-5 | 62 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-5 | 63 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MEVMIKSRNS SSNSLVGSME PTPATTEEAK VGKKRSSKAA SSSKKNHDDI GGDDDNQSEQ 60 QVHIWTERER RKRMRTMFTN LQALLPQLPS KAGARCSSQF PESLSVEDTF KLAAGEMNLW 120 LLSC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10018723 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A061FIU3 | 2e-15 | A0A061FIU3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative | ||||
STRING | Lus10018723 | 2e-87 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4773 | 33 | 58 |
Link Out ? help Back to Top | |
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Phytozome | Lus10018723 |