PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10018714 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 252aa MW: 28617.2 Da PI: 6.9571 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89 | 2.4e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l +s Lus10018714 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSFFS 58 79********************************************8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.1E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.815 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.65E-35 | 2 | 58 | No hit | No description |
SuperFamily | SSF55455 | 3.92E-27 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-26 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGRVKLQMKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSFFSAR 60 DQSSGGFPNS PECQFQEFEQ GMRRLRTQME TAHKQLRILE GNVSHITTLY EAEYQEQILQ 120 DALKRLLIRK QSLEQKLVSP DADSLMIRQQ APSSIVMDWI PSPQLQVVMS PPLCVEHQNN 180 NGGNPHHDHH HWPHFDDSLV LSNHNNHNSG GLSSATDEMP RHDSCTSWEE LLLNNNMDNL 240 GFTRTNSPPS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-17 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_B | 2e-17 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_C | 2e-17 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_D | 2e-17 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_A | 2e-17 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_B | 2e-17 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_C | 2e-17 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_D | 2e-17 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10018714 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021601760.1 | 1e-54 | agamous-like MADS-box protein AGL66 | ||||
Swissprot | Q9LM46 | 8e-32 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A2C9U0P6 | 3e-53 | A0A2C9U0P6_MANES; Uncharacterized protein | ||||
STRING | Lus10018714 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13665 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 2e-34 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | Lus10018714 |
Publications ? help Back to Top | |||
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