PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10018655 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | AP2 | ||||||||
Protein Properties | Length: 592aa MW: 64906.5 Da PI: 8.1372 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.2 | 7.2e-12 | 227 | 283 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +++Aa+a++ a++k++g Lus10018655 227 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEDKAARAYDLAALKYWG 283 78*******************77776664346655.77***99*************98 PP | |||||||
2 | AP2 | 43.3 | 9.2e-14 | 328 | 377 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+ ++ a+ k++g Lus10018655 328 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAESYDVAAIKFRG 377 9***************988532...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-14 | 227 | 293 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.63E-18 | 227 | 291 | No hit | No description |
Pfam | PF00847 | 3.1E-9 | 227 | 283 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.056 | 228 | 291 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-21 | 228 | 297 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-12 | 228 | 292 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-6 | 229 | 240 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-17 | 326 | 386 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.80E-24 | 326 | 387 | No hit | No description |
SMART | SM00380 | 1.3E-31 | 327 | 391 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-18 | 327 | 385 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.913 | 327 | 385 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.5E-9 | 328 | 377 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-6 | 367 | 387 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MSCDSNNNGG SSSSWLGFSL SPQMKMDLPH SDHQHHPLYI TGQQQGPFLH HSPLTVMPLK 60 SDGSLCIHQP TSTSTSSSSP KLEDFLGAGR PDHHNIPPLT FDSYYNINNQ EDNNNPFHSS 120 SSYYPAAFHW LTPSCFPNFD SHNNNHLQDL QVGSCCVGGD LQSLTLSMSP GSQSSSVTAA 180 SNNNITTTTT TQQCVTTESK KRALPEKPAQ KHTVHRKSID TFGQRTSQYR GVTRHRWTGR 240 YEAHLWDNSC KKEGQTRKGR QGGYDMEDKA ARAYDLAALK YWGPSTHINF PLENYHKELE 300 EMKNMSRQEY VAHLRRKSSG FSRGASMYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFTT 360 QEEAAESYDV AAIKFRGANA VTNFDITRYD VEKIMTSNTL LAGDLARRKS NNNNKELDTM 420 SSSVNIPQAA AIGYLTTTSD NNITSPHNNN GNVTSLSEWN AMLYGSNSNH HEAGFESGGN 480 GFMRVSSSSP FHDLIAMESS LSNSPQVDMA AKLGTHSTSS NPSSLVTSLS SSREGSPDKV 540 VNTSSTTAAA AMLFGKPPLA SKYVSPVTSS STIPPWFQAN LPLFASWNDA S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10018655 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016726933.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Refseq | XP_021284854.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-144 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q84Z02 | 1e-143 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A218X5W8 | 0.0 | A0A218X5W8_PUNGR; Uncharacterized protein | ||||
STRING | Lus10018655 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-133 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10018655 |