PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10018637 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 309aa MW: 34627.5 Da PI: 8.1124 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.1 | 8.9e-33 | 65 | 208 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tk... 79 lp+G++F+Ptd+el+ e+L+ kv+++ +++ +i+++d i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ t+ Lus10018637 65 LPAGVKFDPTDQELL-EHLEGKVKSDVgmlhplIDE--FIPTIDgengICYTHPERLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKvhsddtTEggg 158 799************.99******999888644333..3444444445**********.555666688******************867777633444 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l Lus10018637 159 ETRWHKTGKTRAVQI-GGKTKGYKKILVLYtnYGKQKKPEKTSWVMHQYHL 208 667************.99************6658999************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-37 | 57 | 227 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.254 | 65 | 227 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-16 | 66 | 208 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MTWCNDCIDV QTIETSSPPP PNSTDTHHHQ HHVTNHRHGF TKSCPSCGHQ IKCQNQARLH 60 DLPGLPAGVK FDPTDQELLE HLEGKVKSDV GMLHPLIDEF IPTIDGENGI CYTHPERLPG 120 VSKDGLVRHF FHRPSKAYTT GTRKRRKVHS DDTTEGGGET RWHKTGKTRA VQIGGKTKGY 180 KKILVLYTNY GKQKKPEKTS WVMHQYHLGS GEDEKDGELV VSKVFYQTQP RQCKATSTSS 240 FLMMTHDHHH HHEEYYGPNP NIGSTTTTYS GGDHHSSRSL SGTAGVSHQQ SSQHLMNPHF 300 TVHDNCLN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10018637 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024444706.1 | 1e-139 | NAC domain-containing protein 73 | ||||
Refseq | XP_024444707.1 | 1e-139 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-120 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | B9MYC7 | 1e-137 | B9MYC7_POPTR; NAC family protein | ||||
STRING | Lus10018637 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-120 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Lus10018637 |
Publications ? help Back to Top | |||
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