PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018634
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-other
Protein Properties Length: 1746aa    MW: 195638 Da    PI: 5.1308
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018634genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.15.4e-173792257
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                 +kR   t++qle+Le+ ++ + yp ++ r eL+++lgL++rq ++WF+ rR k++k
  Lus10018634 37 SKRKMKTASQLEVLERTYAAEAYPPEALRIELSAQLGLSDRQLQMWFCHRRLKDRK 92
                 58999*************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-161494IPR009057Homeodomain-like
SuperFamilySSF466896.84E-152092IPR009057Homeodomain-like
PROSITE profilePS5007115.8723393IPR001356Homeobox domain
SMARTSM003896.1E-163597IPR001356Homeobox domain
PfamPF000461.1E-143892IPR001356Homeobox domain
CDDcd000862.42E-123893No hitNo description
PROSITE profilePS5082716.873582641IPR018501DDT domain
SMARTSM005713.5E-22582641IPR018501DDT domain
PfamPF027917.0E-17583638IPR018501DDT domain
PfamPF050667.1E-13765832IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156127.4E-99761015IPR028942WHIM1 domain
PfamPF156132.3E-1111591230IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1746 aa     Download sequence    Send to blast
MEDSGGVATT PAGGGGSSSS PAIGSEKKSA EGDNKSSKRK MKTASQLEVL ERTYAAEAYP  60
PEALRIELSA QLGLSDRQLQ MWFCHRRLKD RKSAQGKSRR KDSPPAATAA LPATVLPGEE  120
MMAVSEAYRE HLPASASAST SRSSPFGHVT DPRRLVARTP GVAVPRISGD PLTVKRYYEP  180
QHSIQELRAI AFVEAQLGEP LRDDGPILGM EFDSLPPDAF GALIGSAATL GHQKASGRHF  240
ESNLFERSDA KATKGPTRAL HEYQFLPPQP SVGADGYERT APLYSYGSPS DSHSTKNVPL  300
SAGRPFMHGN EQSSSGYGYP GQLPSLSLMP QEVQQGHHLL LSSGEFDTAS QRNTFTNMEM  360
DAQLGPHAVT ALENPFTSSD RRVDHTEDVL RMERKRKSEE ARLAREVDAH EKRIRKELER  420
QDILRRKREE QIRKDLERQE RERRKEEERV MREKQREEER YQKEQRREME RREKFLQKES  480
LKAERMRQKE EMRREKEVAR QKAATERAHA RRIAKESVEL IEDEKLELME LAASSKGLPS  540
LLELDLESLQ NLDLFRDELS TFPPNSVPLR RPFAVQPWSN SEENIGNLLM VWRFIITFTD  600
VLGLWPFTFD EFVQAFHDYD PRLLGEIHVA LLKSIIKDIE DVARTPASGL GTNQNSSGNP  660
GGGHPRIVEG AYAWGFDIRN WQCHLNPLTW PEILRQFGLS AGFGPRLKRR KVEQFRDDNE  720
VFVGNDGKDV ISNLRNGVAA KNAVAIMHER GFANPRRSRH RLTPGTVKYA AFHILSLEGS  780
NGLSILDVAE KIQKSELRDL STSKTPEASI AAALSRDTKL FERTAPSTYC VRTPYRKDPF  840
DAEAILTTAR EKIQIFKSGL VEEDADEAER DEDSESDVAE DPEVDDLDGD LNSNKESYCS  900
PELGKFGVQS SVENGKDEKN DVKKEQVCAE KVDGSSSVCL ESSNQSKGSA AAVDHTVSAK  960
AVSSIVENTD IDESNPGELW VQGLTEGEYS DLSVEERLNA LVALVGVANE GNSIRLVLEE  1020
RLDAANALKK QMWAEAQLDK RRTKEDYFLK QYSQFAGNKM DPNLLTPVTE GRQSPLVTLD  1080
EKIKTTPLSA VVSQEQPRDL ENDVNLHKNF PSEGNTQIQD LPVGADNLPY HHLGHVTERS  1140
RSQLKSFVNH KAEETYVYRS LPLGLDRRRN RYWQFITCPS RNDPGCGRIF VELHDGRWRL  1200
IDSEEGFDSL LACLDVRGMR ESHLHFVLRR IEKSFKETVR RTLLQAKTEN SVTNGDDSPR  1260
SAVCPTDSDA SETSTSFSIE LGGNRSERNS SLKRYCDFER WMWKECSSTT LLSATKYGQK  1320
RCTQLLGVCA DCHDIYFSED DSWCSSCNRA PDPTKTIDDL PQNFNNYAPV RSRVLKLLLA  1380
LIEVSLPPEA LESFWTSALR KSWSKKLSSM SSAEEQLQAL TVLEAALRKD YLLSNFETTS  1440
ELLGMSDPPG FDAATISSSM DMVPLLPWLP RTTAAVALRV MEFDASIAYV LQQKVKLEED  1500
KIAGDFSAVA NSSYSIQTTG TFHKGGAYQE DSWVDVGNGS GGFSSGRAYR GGRGRKRLAH  1560
SGPQSQRKVT GPRSDSRKRN TVSSGLAWKG RPRVRGGRKR GRGSAGSRQK SAAKTTVTVI  1620
APQRETLKET VFEKPRDEWN EEARFPVEVD ENASSSERSD CDDEIGKLGD FQPLSDDDME  1680
VNEDDQDEYR EEEEEEEMDE YEYEDEERNL EVDGYINAES DEEMDEMQNE DRDPDGTASS  1740
SDFSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
115961602GRKRGRG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018634
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021636583.10.0homeobox-DDT domain protein RLT2 isoform X2
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A2C9URI80.0A0A2C9URI8_MANES; Uncharacterized protein
STRINGLus100186340.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator