PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10018621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C3H | ||||||||
Protein Properties | Length: 349aa MW: 39199.4 Da PI: 7.8729 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.5 | 1.1e-08 | 97 | 120 | 4 | 26 |
---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 4 elCrffartG.tCkyGdrCkFaHg 26 + C+ f+r G tC +Gd+C FaHg Lus10018621 97 SVCPEFRREGgTCGRGDNCEFAHG 120 57*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0013 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.174 | 94 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-5 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-7 | 97 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 127 | 159 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5 | 130 | 153 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MSYADHHFSL DDMSSCEHFY KHLTRNNKVD DDTNAVDYDG GGDDDDDPYS SDQFRMYEFK 60 IRRCTRSRSH DWTVCPFAHP GEKARRRDPR KFHYTGSVCP EFRREGGTCG RGDNCEFAHG 120 VFECWLHPSR YRTEACKDGK SCKRKVCFFA HSRGQLRQLP TEKSSSCSKK IGHDMNFNHR 180 CNGASSPTST LLGLSHISPP LSPASFSSAS RPLSPAGFFS RPSKLQPRFT SYKDVLAELV 240 SSLKTMNFNV DVAPAAAIAS ASSPIKMNLR VNPWLNREDY YNQLEEQQFM SPVTTPSYAS 300 PASSSGGDRW FVNEPDRVVN DNSQNRSRSG GEARGLDPDL GWVNELLM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10018621 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015573898.1 | 3e-99 | zinc finger CCCH domain-containing protein 2 | ||||
Swissprot | Q9ZWA1 | 4e-77 | C3H2_ARATH; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | U5FMC6 | 1e-89 | U5FMC6_POPTR; Uncharacterized protein | ||||
STRING | Lus10018621 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6261 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 6e-69 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10018621 |
Publications ? help Back to Top | |||
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