PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10018547 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 29453.3 Da PI: 4.856 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 5.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ed +l+ +v ++G ++W++ +r g+ R++k+c++rw++yl Lus10018547 14 KGTWTRDEDVKLAAYVSRYGCRNWRRLPRDAGLARCGKSCRLRWLNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.4 | 1.6e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+ +v ++++lG++ W+ Ia +m+ gRt++++k++w+++l Lus10018547 67 RGNFTQEEEAAIVSLHEKLGNK-WSVIATYMP-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.457 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.41E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.833 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 69 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.75E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MARTPYVDRN GLKKGTWTRD EDVKLAAYVS RYGCRNWRRL PRDAGLARCG KSCRLRWLNY 60 LRPDIKRGNF TQEEEAAIVS LHEKLGNKWS VIATYMPGRT DNEIKNFWNT HLKRLQPKEE 120 PLESNVSDEN DRHVLLGSNF GAGIKNEFSD FDEISSWIEN YNEDINHAAI EVSVSPHDLD 180 HYSPDHHMSV GSNSSSNSET EMATTAVASN DELGDLISDY ILSQPFSTYE EVDQYDTWWS 240 EVWRTSTNTD QFQYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 12 | 114 | 5 | 106 | B-MYB |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10018547 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027339958.1 | 6e-61 | transcription factor MYB13-like | ||||
STRING | Lus10018547 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 2e-55 | MYB-like 102 |
Link Out ? help Back to Top | |
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Phytozome | Lus10018547 |