PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10018328 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 180aa MW: 19789.3 Da PI: 10.0616 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.4e-05 | 36 | 58 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Lus10018328 36 FSCNYCNREFYSSQALGGHQNAH 58 89******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.89E-6 | 33 | 63 | No hit | No description |
PROSITE profile | PS50157 | 11.157 | 36 | 63 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.8E-5 | 36 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 38 | 58 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 180 aa Download sequence Send to blast |
MESVNDHQPT NKKRKEELNL IDCLDAGTSS QEKAKFSCNY CNREFYSSQA LGGHQNAHKR 60 ERCLAKRGLM MITRRVNTTA AASYYHPSTF HNSWHRYGTS PFAVQPHSLH HNGPPPISSS 120 SRLPAAAASH QGPLQPRGFG MLTNSIMPLQ PPPPPPSPPL STTTSSQYSS QKLDLALRL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10018328 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010493763.1 | 1e-23 | PREDICTED: zinc finger protein 3-like | ||||
STRING | Lus10018328 | 1e-131 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17044 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25160.1 | 2e-24 | zinc finger protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10018328 |