PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018076
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family DBB
Protein Properties Length: 187aa    MW: 20734.1 Da    PI: 6.105
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018076genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.51.1e-07433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+  ++lfC  ++  lC+ C ++ H
  Lus10018076  4 LCDVCESAAAILFCAADEASLCRACDDKVH 33
                 7**************************998 PP
2zf-B_box279e-095492438
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                 ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  Lus10018076 54 PCCDICENAPAFFYCEVDGTSLCLQCDMIVHVGgkrtHR 92
                 79**************************99966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.011147IPR000315B-box-type zinc finger
SMARTSM003363.1E-8147IPR000315B-box-type zinc finger
PfamPF006434.5E-6343IPR000315B-box-type zinc finger
CDDcd000211.74E-5347No hitNo description
SMARTSM003364.3E-105196IPR000315B-box-type zinc finger
PfamPF006435.9E-75492IPR000315B-box-type zinc finger
CDDcd000219.03E-75693No hitNo description
PROSITE profilePS501199.0725696IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EASLCRACDD KVHMCNKLAS RHVRVALAVP SATPCCDICE  60
NAPAFFYCEV DGTSLCLQCD MIVHVGGKRT HRRYLLLRQR VEFPGDKPIH FEGQNGHVRM  120
DRNHQQEADT QHNTNATTTE NHFAAGDDLI DLNSRPHRMN GEDSTNHEGE LSDSRFRNLI  180
NDSSSS*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018076
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022763166.11e-77B-box zinc finger protein 19-like isoform X1
RefseqXP_022763168.11e-77B-box zinc finger protein 19-like isoform X1
RefseqXP_022763169.11e-77B-box zinc finger protein 19-like isoform X1
RefseqXP_022763170.11e-77B-box zinc finger protein 19-like isoform X1
SwissprotC0SVM53e-71BBX19_ARATH; B-box zinc finger protein 19
TrEMBLM5VQ215e-76M5VQ21_PRUPE; Uncharacterized protein
STRINGLus100180761e-136(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-73DBB family protein