PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017970
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 267aa    MW: 30208.8 Da    PI: 9.7347
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017970genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.6e-17696197
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 ffk+ ++s+  +++ l lpkkf+++hg++   ++++ ++ ++g++We+ +  +k+ ++ +++++GW+ F+    ++    +vFk++g+s+f  +v+++
  Lus10017970  6 FFKIILQSSIDENK-LHLPKKFLKKHGNE--LGRKVLFKVPDGKTWEIMV--QKTCDGvTWFSQGWSAFAARYSICYAYLLVFKYKGDSCF--HVRIY 96
                 89999999999998.***********965..889****************..7777777********************************..88876 PP
2B347.14.4e-151832621798
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++p kfa++h g +e+s ++++ ++ +++W ++l  r+ +g+  l+ GW +F  +n+Lk gD+++F+l++  ef ++ ++fr
  Lus10017970 183 YVPGKFANAHLG-PECSYMIVFDSRGSKEWVIRL-NRRERGGLNLGLGWGDFRAENDLKPGDVCLFELVNPGEFFMKSHIFR 262
                  689****99955.57*******************.4666666**************************98888878888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-214101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.66599IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-225101IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-13699IPR003340B3 DNA binding domain
CDDcd100178.83E-16696No hitNo description
PfamPF023624.1E-13696IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-15160255IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-17161256IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-7167264IPR003340B3 DNA binding domain
PROSITE profilePS5086311.335167264IPR003340B3 DNA binding domain
CDDcd100175.99E-8183262No hitNo description
PfamPF023623.0E-13183263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGSRNFFKII LQSSIDENKL HLPKKFLKKH GNELGRKVLF KVPDGKTWEI MVQKTCDGVT  60
WFSQGWSAFA ARYSICYAYL LVFKYKGDSC FHVRIYTPNA CEIVYPAGDD HRPPNVAVRN  120
EVGEGSGSGF RIETIVATSF KQIRNKATGS EKRTINIAME LSLKNPSWTL VIKPYNFILP  180
VGYVPGKFAN AHLGPECSYM IVFDSRGSKE WVIRLNRRER GGLNLGLGWG DFRAENDLKP  240
GDVCLFELVN PGEFFMKSHI FRVSDH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017970
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100179700.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-16B3 family protein