PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017944
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-other
Protein Properties Length: 341aa    MW: 37925.7 Da    PI: 8.7754
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017944genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.4e-081374655
                 S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
     Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                 +f+++++ e+e+  ++  +  ps+e    +A+k           +++ +qV +WFqNrR+  
  Lus10017944 13 RFSHNEVAEMEAILQQykQVMPSREVLVAIADKFsesperkgkiSVQMKQVWNWFQNRRYAI 74
                 6999999*****999766999*********************99***************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.92E-10477IPR009057Homeodomain-like
SMARTSM003896.1E-4781IPR001356Homeobox domain
CDDcd000865.29E-51375No hitNo description
PROSITE profilePS500719.4911377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.6E-71381IPR009057Homeodomain-like
PfamPF000463.5E-51374IPR001356Homeobox domain
PfamPF167192.8E-41130257IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFSHNEVA EMEAILQQYK QVMPSREVLV AIADKFSESP ERKGKISVQM  60
KQVWNWFQNR RYAIRAKSSK APAKLSITQV PRDDTNTVRN APHPVAPPAF INAPTNIAAP  120
SGRMTPENSY MEFEAKSGRD GAWYDVGSFM SHRYLDKGDP DVLVRFSGFG PDEDEWINVR  180
KNVRQRSLPC EASECVAVLP GDLILCFQEG KDQALYFDAH VLDAQRRRHD VRGCRCRFLV  240
RYDHDQSEEI VPLRKVCRRP ETDYRLQQLH AALDSTSQEQ PKSGTAERVS TTSAITETMP  300
KQRSLDSIMS VPKAPESSTS VAGNAGVVAV RSSIAPSSSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A4e-471312614134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-471312614134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-471312614134SHH1 SAWADEE
4iur_B4e-471312614134SHH1 SAWADEE
4iut_A4e-471312614134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-471312614134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-471312614134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-471312614134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A4e-471312614134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-471312614134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017944
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021683099.11e-174protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2
SwissprotQ8RWJ71e-146SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A061FF911e-168A0A061FF91_THECC; DNA binding protein, putative
STRINGLus100179440.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-135sequence-specific DNA binding transcription factors;sequence-specific DNA binding