PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 530aa    MW: 59174.9 Da    PI: 6.7922
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017930genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS342.85.6e-1051535261374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  lv+lL++cAeav+ +d+  a+alL++l++ a   g+++qR+a++f+++L++rl+  +  + +  ++p   ++  s+e+  al+l +e +P ++f+h++
  Lus10017930 153 LVQLLIACAEAVACRDKPHASALLTELRTKALVLGSSFQRVASCFVQGLSERLSLvQPLGAVGFVAPIIMDRAVSDEKEEALSLVYENCPHIQFGHFV 250
                  689***************************************************9444455666677778778899999******************* PP

         GRAS  98 aNqaIleavegeervHiiDfdis....qGlQWpaLlqaLa.sRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrle 187
                  aN+ I+ea+ege+ vH++D++++    +G QW  L+++La +R+  + p +lR+Tgvg     s ++ + +g+ L+++A+e  ++++ef+v v+++le
  Lus10017930 251 ANSSIMEALEGESFVHVVDLGMTlglaHGHQWRGLIESLAnDRAgeHHPVRLRVTGVGT----SVKRFSVIGKELKEYAKEYgNIEMEFSV-VESNLE 343
                  *******************98652333889**********7788634455*********....9****************9846******9.7***** PP

         GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                  +l+++++++++gE+l+Vn++lqlh +++es    +   +vL+++++lsPkv+v++eq+++hn++ Fl rf+eal+yy+a+fd+++a lp+ +  r+k+
  Lus10017930 344 NLKPQDIKTHEGEVLVVNSILQLHCVVKESRGALN---SVLQMINNLSPKVMVLMEQDSSHNGPFFLGRFMEALHYYAAIFDAMDAMLPKYDTRRAKM 438
                  ***************************88877777...8*********************************************************** PP

         GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  E++++g+ei+n+v+ceg  r+erhe+l +Wr+r+++aGF+  p++    ++   l++k   +gy+v ee+g+lvlgWk+rp+vsvS+W+
  Lus10017930 439 EQFYFGEEIKNIVSCEGGGRVERHEKLDQWRRRMSRAGFQGSPVKMLGKAKQ-WLVSKKVTQGYTVVEEKGCLVLGWKSRPMVSVSCWK 526
                  *******************************************986554443.34444447***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.969127507IPR005202Transcription factor GRAS
PfamPF035141.9E-102153526IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MGPGLLCNYS DESHDRVKGP DMSLKEMAFY PYPYLPILEN SYASEFLIPI LDHDDADAAV  60
DDSRRHKRIK RNNSVPASIG SNIDKSGGSM MMMMNRSLSI GSMMNTLPRL HFRDHIWTYT  120
QRFRAAEAIE EAVKSMDINN GEEDGDSSDG MRLVQLLIAC AEAVACRDKP HASALLTELR  180
TKALVLGSSF QRVASCFVQG LSERLSLVQP LGAVGFVAPI IMDRAVSDEK EEALSLVYEN  240
CPHIQFGHFV ANSSIMEALE GESFVHVVDL GMTLGLAHGH QWRGLIESLA NDRAGEHHPV  300
RLRVTGVGTS VKRFSVIGKE LKEYAKEYGN IEMEFSVVES NLENLKPQDI KTHEGEVLVV  360
NSILQLHCVV KESRGALNSV LQMINNLSPK VMVLMEQDSS HNGPFFLGRF MEALHYYAAI  420
FDAMDAMLPK YDTRRAKMEQ FYFGEEIKNI VSCEGGGRVE RHEKLDQWRR RMSRAGFQGS  480
PVKMLGKAKQ WLVSKKVTQG YTVVEEKGCL VLGWKSRPMV SVSCWKSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5416052926382Protein SCARECROW
5b3h_A9e-5516052925381Protein SCARECROW
5b3h_D9e-5516052925381Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017930
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322227.10.0DELLA protein RGL1
TrEMBLB9IF610.0B9IF61_POPTR; Uncharacterized protein
STRINGLus100179300.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-74RGA-like 1