PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017892
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Whirly
Protein Properties Length: 244aa    MW: 26585.5 Da    PI: 9.5279
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017892genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly199.73.7e-62662021137
       Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 
                  svyk+kaal+v +++ptf++ldsg+lk+ r+G+++++++++++erkyd+ekkq fals+tev++l++l++k+s++ffhdp++k+sn+G+vrk+l+++P
  Lus10017892  66 SVYKGKAALSVTPILPTFTKLDSGSLKVGRTGTMMMTFMPSIGERKYDYEKKQMFALSPTEVGSLLSLGPKDSSDFFHDPSMKSSNAGQVRKSLSIKP 163
                  79************************************************************************************************ PP

       Whirly  99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                  ++dGsG+f++lsv n+++k+n++++vP++ aef vl+++
  Lus10017892 164 HADGSGYFISLSVVNNVLKTNDRVTVPITTAEFVVLKTA 202
                  ************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.8E-7358221IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.41E-6959242IPR009044ssDNA-binding transcriptional regulator
PfamPF085364.1E-5967201IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MENETLLLMI WNCSKPSYCQ WLGCRNSPSG KPGVGSDAYP RLQSPISTTA AGNDGFAGDR  60
IYAPFSVYKG KAALSVTPIL PTFTKLDSGS LKVGRTGTMM MTFMPSIGER KYDYEKKQMF  120
ALSPTEVGSL LSLGPKDSSD FFHDPSMKSS NAGQVRKSLS IKPHADGSGY FISLSVVNNV  180
LKTNDRVTVP ITTAEFVVLK TACSFALPHI IGWDRLTSPQ PQQLKDVGNP SKRKLHPDLE  240
WDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A3e-896021710167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B3e-896021710167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C3e-896021710167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D3e-896021710167Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017892
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021659141.12e-98single-stranded DNA-bindig protein WHY2, mitochondrial-like
SwissprotQ8VYF74e-91WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2C9WFY51e-96A0A2C9WFY5_MANES; Uncharacterized protein
STRINGLus100178920.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-93WHIRLY 2